Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq282 149 6e-31 seq230 136 4e-27 seq275 129 6e-25 seq285 104 2e-17 >seq282 Length=398316 Score = 149 bits (164), Expect = 6e-31 Identities = 160/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| || || || || ||||| ||||| ||||| ||| |||| || || || Sbjct 140780 AAAAATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGC 140721 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | | | ||||| |||||| ||||| | ||||| |||||||| ||| | | Sbjct 140720 CTCCGACACCATCGAAAACG-TCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAG 140662 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | |||||||| | |||| || ||||| || ||||| || | || ||||| | ||| | Sbjct 140661 ATCAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATT 140602 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||| |||||| | || ||||| Sbjct 140601 ACAACATCCAAAAGGAGTCTACATTGCAT 140573 >seq230 Length=975444 Score = 136 bits (150), Expect = 4e-27 Identities = 190/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| || || || |||| ||| | |||||||| | |||||| || |||| Sbjct 389834 TTCAACGCAATTGAAACAGTGCCTGCCGTTCAGAAGAAGGCCAAATGGGCGTTGAACTGG 389893 Query 117008 ATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | | || | || ||| | || | | || || ||||| | ||||| || Sbjct 389894 ATCAATG-CGGATAACGCTTCCTATGCAGAAAGAATTGTCGCTTTCGCTTCAGTCGAAGG 389952 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||||||| || || || |||||||| || ||||| ||||| || || | ||||| Sbjct 389953 AATTTTCTTTTCCGGAAGCTTTGCCGCCATTTTCTGGCTGAAGAAGCGAGGATTGATGCC 390012 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| |||||||||||||||| | |||||||| ||||| ||| ||||| |||||||| Sbjct 390013 CGGATTGACTTTCAGCAACGAATTGATCTCCAGAGACGAAGGTTTGCATACGGACTTTGC 390072 Query 117187 CTGTTTGCTGTTCAAGCATTTGGT 117210 || ||| ||| |||||| ||||| Sbjct 390073 ATGCTTGATGTACAAGCACTTGGT 390096 Score = 104 bits (114), Expect = 2e-17 Identities = 177/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 || ||||| || || || |||| || || ||| |||||||| || ||| ||| Sbjct 389385 TTTGTGATCTTGCCTATCAAATATGACGATATCTGGAAAATGTACAAGAAAGCCATGGCC 389444 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG 116725 |||||||| | |||||| | ||| |||||| |||| | || |||| ||| Sbjct 389445 AGCTTCTGGACTGCCGAGGAAATTGACTTGTCCATGGACTTGGCAGATTGGGCCAAGTTG 389504 Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 || ||| |||| || |||||||||||||| | ||||| || |||||| ||||||| Sbjct 389505 AAGGACGACGAAAAGCACTTCATCAAGCACGTCTTAGCCTTCTTTGCCGCCTCCGACGGC 389564 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 || ||||| ||||| || || || | ||| || || || || | | ||||| | Sbjct 389565 ATTGTCAATGAGAACCTTGTTGAAAGGTTCATGCAAGAAGTTCAAATTCCTGAGGCCAGA 389624 Query 116846 TGCTTCTACGGCTTTCA 116862 ||||| || ||||| || Sbjct 389625 TGCTTTTATGGCTTCCA 389641 >seq275 Length=453286 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||||||||| | || || || ||||||||| |||| || || | | Sbjct 384752 AATGCAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGAGGTTGAGCCTTC 384693 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 384692 TGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 384633 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || ||||| || |||| || | ||||||||| |||||||| Sbjct 384632 GCAACGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCTCTCTGACTACAA 384573 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | || || || | || ||| | |||||||| ||| Sbjct 384572 TATCCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGGGGAGGC 384524 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || |||||| | || || || | || Sbjct 384523 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCC 384464 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| || || | ||||| |||||||| ||| | || ||| Sbjct 384463 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 384404 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| ||||| || |||| || | ||| || ||| ||||||||| Sbjct 384403 CAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAAC 384344 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || | |||||||| Sbjct 384343 ATCCAGAAGGAGTCTACTCTTCACTTGGTGTTGCG 384309 >seq285 Length=381527 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| ||||||||||||||||||||| |||| || || || Sbjct 34316 AAAATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACCCTCGAGGTGGAGCCC 34375 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||||| || || | ||||| ||||| || || | || Sbjct 34376 TCTGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGAT 34435 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 |||||||| | |||| || ||||| || |||| || ||| Sbjct 34436 CAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGAGGAG 34477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515189407449760