Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq239 181 7e-41 >seq239 Length=840022 Score = 181 bits (200), Expect = 7e-41 Identities = 424/629 (67%), Gaps = 13/629 (2%) Strand=Plus/Plus Query 97009 GGGAAAGGCCTGGGAGTTCGCGT--AAGCTGC-TCTGTGAGAGCATCAATGTGATTCACA 97065 ||||| ||| | || ||| ||| |||||| ||| | | ||| || || || |||| Sbjct 247720 GGGAACGGCTTAGG--TTCACGTTCAAGCTGAGTCT-TCAAAGCGTCGATATGGTTCAAG 247776 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | |||||||| || | || |||| ||| ||||||| ||| | || ||||| Sbjct 247777 TAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCACATGA 247836 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || |||||| ||| || || | ||| |||||||| ||||| || |||| ||||||| Sbjct 247837 GCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCCCATA 247896 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 ||||| |||||||| || || || ||| |||| |||| ||| ||||| ||| | Sbjct 247897 TCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATTGA-GC 247955 Query 97246 AATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGAC--ATTCCAAGCACAC 97302 || || |||||| || ||||| |||||||| | || | || | |||||||||||| Sbjct 247956 AAGACAATGACAAGGTGGCAAAGCCATTTT--GCTCAGGTCAGTCGGGTTCCAAGCACAC 248013 Query 97303 ATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGA 97362 || | || | || || || || | | || | | ||| | || ||| | ||| Sbjct 248014 ATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCTGA 248073 Query 97363 TCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTC 97422 || || |||| ||| |||| | | |||| ||||| || |||||||| | | Sbjct 248074 TCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGACGC 248133 Query 97423 CATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTA 97482 ||||||||||| |||||||| ||||| || |||| | || | || || |||| Sbjct 248134 CATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGCTTG 248193 Query 97483 TCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCT 97542 || | | || || |||||||| ||||||||||| | || | | | | || Sbjct 248194 TCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTCAGACAATTCA 248253 Query 97543 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAAT 97602 |||| | || || || | ||| ||||| || | |||||| ||| |||| |||||| Sbjct 248254 TTGCCATTGGTTGAACCACGGATGAACCAAAAAAGTTCTTCTGCAATGCCTCGCCAAAAG 248313 Query 97603 ACTCTCTTAGTTGTTAA-GAGAGGAAAAT 97630 | | || ||||| || || ||||||| Sbjct 248314 GTTTTTTTGGTTGTCAATAAGGGGAAAAT 248342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346764448534820