Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq239 138 2e-27 seq282 131 3e-25 seq252 123 4e-23 >seq239 Length=840022 Score = 138 bits (152), Expect = 2e-27 Identities = 409/628 (65%), Gaps = 7/628 (1%) Strand=Plus/Plus Query 205333 TTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACA 205392 || || || || || ||| |||||| | || | || || | | ||||| || | Sbjct 247717 TTGGGGAACGGCTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCGTCGATATGGTTCAAG 247776 Query 205393 TATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGT 205452 || | ||| |||| || | |||||| ||| || | || ||| || | ||| Sbjct 247777 TAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCACATGA 247836 Query 205453 GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATA 205512 |||||||||| |||||| | |||| |||| || || ||||||||||| |||||| Sbjct 247837 GCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCCCATA 247896 Query 205513 TCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGT 205572 ||||| |||||||| |||| ||| || | || | | ||| || | |||||| Sbjct 247897 TCAGCGGATCTTTGGTACAATTGGCAGCTGAG---CTCACCATTGGCCACGTAAAATTGA 247953 Query 205573 ACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTT 205632 ||| ||||||||||||||| | | |||| || | || | || ||||| || Sbjct 247954 GCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCACAC 248013 Query 205633 AATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGA 205692 | || || || || || || || || ||||| | || | | | | ||| Sbjct 248014 ATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCTGA 248073 Query 205693 TCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGC 205752 || | ||||| | |||| | || ||| || |||| ||||||||||||||| Sbjct 248074 TCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGACGC 248133 Query 205753 CATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttt 205812 ||||| || || ||||| ||||| | |||| ||| | || | | || || | || Sbjct 248134 CATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGCTTG 248193 Query 205813 tttatatattttaatgatccattttcatcccaaatatggattcctttattttttaGAAT- 205871 | | | | | | ||||||||| |||||||||| ||| | || ||| | ||| Sbjct 248194 TCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGA--CGTTCTTTTCAGACAATT 248251 Query 205872 -ATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAA 205930 ||| ||| ||||| ||| || ||||| || | |||||| |||| |||| ||||| Sbjct 248252 CATTGCCATTGGTTGAACCACGGATGAACCAAAAAAGTTCTTCTGCAATGCCTCGCCAAA 248311 Query 205931 ACATTGATTTTGTTGTAAATAATGGAAA 205958 | || ||| ||||| ||||| || || Sbjct 248312 AGGTTTTTTTGGTTGTCAATAAGGGGAA 248339 >seq282 Length=398316 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || || || | ||| | ||||| Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || || || ||||| ||||| || || || || |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||||||| | || ||| | || ||||| ||| ||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||||||| | ||| | || | ||||| ||||||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGG 140322 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || ||||| || || || | ||| |||| || Sbjct 140777 AATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCCTC 140718 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | || ||||| ||||| || || || || || || ||||| Sbjct 140717 CGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGATCA 140658 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || || ||| | || ||| | || || | ||||| || Sbjct 140657 GCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTACAA 140598 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || |||||||||||| | ||| | || |||||||| Sbjct 140597 CATCCAAAAGGAGTCTACATTGCATTTGGTTCTCCGTCTCCGTGGTGGTAT 140547 >seq252 Length=615714 Score = 123 bits (136), Expect = 4e-23 Identities = 294/447 (66%), Gaps = 4/447 (1%) Strand=Plus/Minus Query 202758 CAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTG 202817 ||| ||| ||||| ||| | ||||| | ||| ||||| |||| ||||| || || || | Sbjct 534584 CAATATCGAATTTGCGTTTGCATCCCGCGTAATTCATAAATCTGATTTTTCCGAAAATAG 534525 Query 202818 GTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATC 202877 ||| ||| |||| || ||||||||| || ||| |||||||| || |||||| | | Sbjct 534524 GTCGTTCAGTCCAGCCTTGATCATGAATTCCGACAATGGACCACATGCAACCAACAAAAC 534465 Query 202878 CATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATG 202937 |||| | || |||||| | | | || || ||||| || | || | Sbjct 534464 CATTAGAGTCCGATCCATCCAAAGAGTACTTGTCATTAAAGTAAAGAGCAAATTCCAAGG 534405 Query 202938 CTTCTTCTGGTGATTTTG--TCCATTCTAATAtttttttAGCCCAATACATTCTTAAATA 202995 |||||||||| |||| | |||| || | || ||||| ||||||||||| | | | Sbjct 534404 CTTCTTCTGG--ATTTCGGGTCCACTCCAGGATCTTTTTGGCCCAATACATCCGCATGAA 534347 Query 202996 TCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATG 203055 |||||| |||||||| | | ||| ||| |||| | |||||||| | || || || Sbjct 534346 TCCATGAATTTTACCTTCAGTTTTCAATTGGATTTGAGCCGCATTCCAAATATCTTCGTG 534287 Query 203056 AGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATG 203115 ||| ||| || | | | | | || | || | | | ||||| |||| Sbjct 534286 GGTTTTGGCAGCGTCTAACTCTTCTTTGGTGTACAAATACTCCCGCTTGTCATTGGTATG 534227 Query 203116 TTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCATT 203175 || || | || || | ||||||| | |||| || ||||| || || ||| ||| Sbjct 534226 ATCCTTCAAAGTGTTCTTGGCCCAATCGCTCCCACCTTTGATATTGTCATAGTTTGGATT 534167 Query 203176 ATAATAACAAAAATTATCACATAGTTC 203202 || |||||||| || || ||| ||| Sbjct 534166 GTAGTAACAAAAGTTGTCTGATAATTC 534140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755412315756800