Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq282 152 4e-32 seq230 147 2e-30 seq275 116 3e-21 seq243 116 3e-21 seq285 96.9 3e-15 >seq282 Length=398316 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||||||| ||||| |||||||||||||||| || || ||| || Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| |||| | ||| |||||||| || || ||||||||||||||| Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| |||||| | | ||| ||||||| ||| | || ||| Sbjct 140688 ATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTG 140747 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||| || ||||| Sbjct 140748 CCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||||||||| || || || ||||| ||| ||||| |||||||| Sbjct 140352 GTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCG 140411 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| || ||||| ||||| || ||||| |||||| || || || Sbjct 140412 GCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTC 140471 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | | || ||||| | ||| | ||| ||||| ||||| || Sbjct 140472 ACGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTC 140531 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 140532 TTGACAAAGATTTGCAT 140548 >seq230 Length=975444 Score = 147 bits (162), Expect = 2e-30 Identities = 344/505 (68%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 44804 AAGGCCGAATGGGCGATGAAGTATATTGACGATGAAAA-GATAACTTTGGCCGAACGATT 44862 |||||| |||||||| |||| | || | | || || | | || || | ||| || | Sbjct 389870 AAGGCCAAATGGGCGTTGAACTGGATCAATGCGGATAACGCTTCCTATG-CAGAAAGAAT 389928 Query 44863 GGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTTTA 44922 ||||| ||||| ||||||||| | |||||||| || || ||||| || || || | Sbjct 389929 TGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCATTTTCTG 389988 Query 44923 CATGAA-AACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAG 44981 |||| || | ||| | ||||||||||| |||| || |||||||||||||| || |||| Sbjct 389989 GCTGAAGAAGCGAGG-ATTGATGCCCGGATTGACTTTCAGCAACGAATTGATCTCCAGAG 390047 Query 44982 ACGAAGGTCTGCACACCAACTTTGCCTGCCTCTACTATAATACGAG-AGTCGATCAA-AA 45039 |||||||| |||| || ||||||| ||| | || ||| || | | | |||| || Sbjct 390048 ACGAAGGTTTGCATACGGACTTTGCATGCTT----GAT-GTACAAGCACTTGGTCAACAA 390102 Query 45040 GTTGGACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT 45099 |||| || | | | || | | ||||||||||| || || || || || Sbjct 390103 GTTGTCCGAAAAGAGGATTTTGCAAATCGTTTGCGAAGCCGTGGATATTGAAATTGAGTT 390162 Query 45100 TTTTGCTGAGGCTCTGCC----CGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAA 45155 | |||| || | || ||| || |||| ||||| |||| | ||||| Sbjct 390163 CCTGACTGAAGCCTTACCTTGTCGACTCATTGGCATGAATG---GCGACT-TGATGGCTC 390218 Query 45156 AGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCC--CAAGATGTA 45213 ||||||| ||| |||||| || || | || | || | | || | |||| |||| Sbjct 390219 AGTACATCAAGTATGTCGCTGACCGATTGCTTCTTGAGCT--CGGATGCAACAAGGTGTA 390276 Query 45214 CTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAttt 45273 | | ||| || || || || || ||| | || ||||| | || |||||||| || || Sbjct 390277 CAACGTTGAAAATCCTTTTGACTTCATGGAGAACATTTCTCTTGATGGCAAAACCAACTT 390336 Query 45274 ttttGAGAAACGCGTCGGCGAATAC 45298 ||||||||||||||| || |||||| Sbjct 390337 TTTTGAGAAACGCGTTGGTGAATAC 390361 >seq275 Length=453286 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | |||||||| || || |||||||| || | ||| ||| ||| Sbjct 384311 CAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCATC 384370 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | || || |||||| |||| | ||| |||||||| || || |||||||||||||| Sbjct 384371 CTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTC 384430 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | ||| | ||| || | ||| ||||| | ||| | ||| Sbjct 384431 TTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATCGT 384490 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || |||| ||| || || || || |||||| || Sbjct 384491 CTTACCAGTCAAAGTCTTAACGAAGATTTGCATGCCT 384527 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | |||||||| |||||||| | ||||| || || || || ||||| || Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| | || || ||||| |||| | ||| ||||| || || || Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||||||| || || || || | ||||| ||| || | ||| ||| Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACC 384704 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | || || || || | ||||||||| || |||||||| Sbjct 384705 TCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 >seq243 Length=773012 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| || |||| |||||| ||||||||| |||||||| ||| | | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | | ||||| || ||||| || |||||||| || || || || || | || Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| || || | ||| ||||||| ||| | || || || |||| |||||| || | Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 118729 AAATCTGCATGG 118740 |||||||||||| Sbjct 551992 AAATCTGCATGG 551981 >seq285 Length=381527 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || ||||| |||| | ||| |||||||| ||||| || |||||||||||| || Sbjct 34464 TGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATC 34405 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || | ||| | |||||| | | ||| ||||||| ||| | |||||||| Sbjct 34404 TTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATGGTTTTGCCC 34345 Query 118713 GTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || ||||||||||| Sbjct 34344 GTGAGGGTTTTGACGAAAATCTGCAT 34319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433805940913192