Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq252 113 8e-20 seq245 96.9 6e-15 >seq252 Length=615714 Score = 113 bits (124), Expect = 8e-20 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 189452 TGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATG 189511 ||||| ||| | ||||| || || | ||||| ||||| ||| | || | || ||| Sbjct 534299 TGGAATGCGGCTCAAATCCAATTGAAAACTGAAGGTAAAATTCATGGATTCATGCGGATG 534358 Query 189512 TATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGT 189571 |||||||| || ||||| || || ||||| ||| || ||||| || ||| | | | Sbjct 534359 TATTGGGCCAAAAAGATCCTGGAGTGGACCCGAAATCCAGAAGAAGCCTTGGAATTTGCT 534418 Query 189572 ATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGT 189631 | || || || |||||||| | || || |||| |||| || | || ||||| Sbjct 534419 CTTTACTTTAATGACAAGTACTCTTTGGATGGATCGGACTCTAATGGTTTTGTTGGTTGC 534478 Query 189632 ATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGGAAAG 189691 |||||||| ||| |||| | || ||| || |||| ||| |||| || || ||||| Sbjct 534479 ATGTGGTCCATTGTCGGAATTCATGATCAAGGCTGGACTGAACGACCTATTTTCGGAAAA 534538 Query 189692 ATAAGATATATGAATTA 189708 || |||| ||||||||| Sbjct 534539 ATCAGATTTATGAATTA 534555 >seq245 Length=708296 Score = 96.9 bits (106), Expect = 6e-15 Identities = 198/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 135649 CATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACG 135708 || || || || || | |||||| ||||||||||| || || || ||| || |||||| Sbjct 317907 CACATTGACCTCAGAAAATGGGCTGATGTTTTTATCATCGCTCCATTAGATGCCAATACG 317848 Query 135709 TTAGCAAAAAT-AGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTG 135767 || ||||| | ||| ||||| || |||||||| | |||| || | |||| || Sbjct 317847 TTGGCAAAGCTCAGC-AATGGCTTAGCGGATAATTTGTTAACGTGCATAGCCCGAGCTTG 317789 Query 135768 GGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCC 135827 |||| || ||||| || |||| ||||| ||||| || | |||||||| || || Sbjct 317788 GGATTTCAAGAAACCCATCTTTTTTGCACCTGCTATGAACACCTTCATGTGGGATCACCC 317729 Query 135828 TATTACAGAAAAACATATAGATACGTTAAAATATATGGGTTTCATAGAAATAGAATGCAT 135887 | | || || | |||| | |||||| | ||| | ||| ||||| ||||| Sbjct 317728 TGTGACCGATACTCATACCAAACAATTAAAAGAATGGGGATACATTGAAATTCCTTGCAT 317669 Query 135888 AGaaaaaaaaCTAGCATGTGGA--GACGTAGGAAATGGTGCTATGGCAGA 135935 |||||| ||| ||||| | ||| |||||| || || ||||| || Sbjct 317668 TGAAAAAGTGCTA--ATGTGTAATGACAAAGGAAAGGGAGCCATGGCTGA 317621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923143416145040