Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq282 114 1e-20 seq291 104 3e-17 seq319 102 9e-17 seq306 100 3e-16 seq267 100 3e-16 seq296 98.7 1e-15 seq361 96.9 4e-15 seq246 96.9 4e-15 seq278 95.1 1e-14 seq225 93.3 5e-14 seq275 86.0 7e-12 >seq282 Length=398316 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||||||| ||||||||| || |||||||| ||| || || | || || Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| ||||| || || | || ||||| || | || | || ||||||||| | Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| |||| | | | |||||| | || || |||| || ||||| ||| Sbjct 140688 ATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTG 140747 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || || || ||||| |||||||||||||||||| Sbjct 140748 CCGGTGAGAGTCTTGACAAAGATTTGCATTTTT 140780 >seq291 Length=339505 Score = 104 bits (114), Expect = 3e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 139121 AAAAAAATCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 139180 Query 60117 TCACCACTATACTACCGAGGATTGAATATA 60146 | |||||||||||| ||||||||| ||||| Sbjct 139181 TTACCACTATACTAACGAGGATTGCATATA 139210 >seq319 Length=230131 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| |||||| || | |||||| |||||| ||||||||||||||||||||| || Sbjct 4610 TGAAAAAAATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 4551 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 4550 ACTTACCACTATACTAACGAGGAT 4527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3558 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 3617 Query 60125 ATACTACCGAGGATTGAATATATAA 60149 |||||| ||||||| ||||||| Sbjct 3618 ATACTAACGAGGATGACTTATATAA 3642 >seq306 Length=281891 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 53113 AAAAAAATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 53172 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | |||||||||||| |||||||||| Sbjct 53173 TTACCACTATACTATCGAGGATTGA 53197 >seq267 Length=497725 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 113620 AAAAAAATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 113679 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| |||||||| Sbjct 113680 TTACCACTATACTAACGAGGATT 113702 >seq296 Length=321611 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 126474 AAAAAAATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 126415 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 126414 TTACCACTATACTATCGAGGAT 126393 >seq361 Length=128253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 113035 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 113094 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 113095 ATACTAACGAGGATTG 113110 >seq246 Length=701585 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||| Sbjct 674322 GAAAAAAAATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 674263 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 674262 CTTACCACTATACTAACGAGGAT 674240 >seq278 Length=442669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 429929 AAAAAAATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 429988 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 429989 TTACCACTATACTATCGAGGAT 430010 >seq225 Length=1235138 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1016248 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1016307 Query 60126 TACTACCGAGGATTGAATATA 60146 ||||| ||||||| ||||| Sbjct 1016308 TACTAACGAGGATGCTATATA 1016328 >seq275 Length=453286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 42942 TTATTGTCCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGA 43001 || ||| | ||||| || || | | |||||||||||| || | || |||||| || Sbjct 384282 TTTTTGACTTATTGGCCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGG 384341 Query 43002 ATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGC 43061 || ||||| || | ||||| ||| | || || | ||||| |||||||| || | || Sbjct 384342 ATGTTGTAGTCTGAGAGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGT 384401 Query 43062 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTG 43121 ||||| || | || | || ||||||||| ||| || |||| | | | || Sbjct 384402 TGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTA 384461 Query 43122 TCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 ||| || || || || | ||||| || || || || | ||||| || ||||||||| Sbjct 384462 TCGGACGGCTCAACCTCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGC 384521 Query 43182 AT 43183 || Sbjct 384522 AT 384523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571784534647280