Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq282 100 4e-16 seq311 98.7 1e-15 >seq282 Length=398316 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||||||| | | | ||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 140321 TCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 140380 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | || ||| || | ||||||||| ||||||||||| | ||| ||||| ||||| Sbjct 140381 CAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGG 140440 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||| ||||| ||||| Sbjct 140441 AATTCCCTCTTTGTCTTG 140458 >seq311 Length=259814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||||||| ||||| || ||||| || || || ||||| | || ||| || Sbjct 106111 ACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGGCCATCCTCC 106170 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || || ||||| ||||| | ||||||||| || ||||| ||||| || ||||| Sbjct 106171 AATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTG 106229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743483405585920