Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq275 95.1 8e-15 >seq275 Length=453286 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | |||| || ||||| ||||||||||| || Sbjct 384297 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 384356 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||| |||||||| ||||| || | || ||||| || ||| Sbjct 384357 AGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 384416 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||||| || || || Sbjct 384417 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACC 384476 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || | ||| || || ||||| ||||| Sbjct 384477 TCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 |||| |||| ||| | ||| ||| ||||| || |||||||| || || ||| | Sbjct 384537 CTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCA 384596 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || ||||| |||||||| || || || | || |||||||| ||| | || ||||||| Sbjct 384597 TCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTTG 384656 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | || | || | ||| | | || || || | |||||| Sbjct 384657 TCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATG 384716 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || | |||||| || ||||||||||| Sbjct 384717 GTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323053785402560