Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq239 206 2e-48 >seq239 Length=840022 Score = 206 bits (228), Expect = 2e-48 Identities = 457/671 (68%), Gaps = 12/671 (2%) Strand=Plus/Minus Query 19968 ACAAAAA-ACAGATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGAT 20026 ||||||| || ||||| || || || ||||| || |||||||| ||| || | Sbjct 248419 ACAAAAAGACTGATCGGACAGGTACCGGAACCAAGTCCATATTTGGAGCTCAAATGCGGT 248360 Query 20027 ATAACTTGAGAAATG-AATTT--CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCG 20083 || || | ||| ||||| |||||||| || || ||| |||||| |||| Sbjct 248359 TCAATCTGCGTGATGGAATTTTCCCCTTATTGACAACCAAAAAAACCTTTTGGCGAGGCA 248300 Query 20084 TTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAA 20143 ||| ||||| | || ||||| || || ||||| ||| | || |||| || Sbjct 248299 TTGCAGAAGAACTTTTTTGGTTCATCCGTGGTTCAACCAATGGCAATGAA-TTGTCTGAA 248241 Query 20144 AAGGA-GTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACA-GCAATGGATT 20201 ||| | || ||||||| || ||||||| | | ||| | ||| |||| ||||| Sbjct 248240 AAGAACGTCCGGATTTGGGATGCCAATGGATCAAGAGACTTTCTGGACAAGCAA-GGATT 248182 Query 20202 TGACA-ACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTG 20260 ||| | ||| ||| ||| | |||||||| || ||||| |||||| | ||||||| Sbjct 248181 -GACTCATCGTGAAGTCAATGATCTTGGTCCTGTTTACGGATTCCAATGGCGTCATTTTG 248123 Query 20261 GAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAA 20320 | || ||||| |||||| | | |||| | ||| ||||| || ||||| | | Sbjct 248122 GTGCGGAATACCAAGACATGCATGCTGATTACTCTGGCCAAGGTGTGGATCAGCTCAAGG 248063 Query 20321 ATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGA 20380 | || ||| | |||||| | || || | ||||| | || || | || || |||| Sbjct 248062 AGGTCATTGACAAAATTAAGAACAAGCCGGATGACAGGCGGATCATCATGTGTGCTTGGA 248003 Query 20381 ACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTAC 20439 || | | || || |||||||||||| || |||||| || ||| ||||||||| Sbjct 248002 ACCCGACTGACCTGAGCAAAATGGCTTTGCCACCTTGTCATTGTCT-TGCTCAATTTTAC 247944 Query 20440 GTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGT 20499 || || ||| ||| | || ||| |||| ||| ||||||||||||||||| | ||| Sbjct 247943 GTGGCCAATGGTGAGCTCAGCTGCCAATTGTACCAAAGATCCGCTGATATGGGATTAGGT 247884 Query 20500 GTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGAT 20559 || |||||||| |||||| |||||| || | || |||||||||| ||||| || | | Sbjct 247883 GTACCTTTCAACATTGCATCTTATGCCCTTTTGACTCATATGATTGCTCATGTGACCGGT 247824 Query 20560 TTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATA 20619 || || || || ||||| || || ||| | || || || ||| | ||| | || ||||| Sbjct 247823 TTGAAGACTGGAGACTTTGTTCATACCCTCGGCGATGCTCATGTCTACTTGAACCATATC 247764 Query 20620 GAACCTTTAAA 20630 || |||| || Sbjct 247763 GACGCTTTGAA 247753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399161494255570