Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq318 89.7 1e-12 >seq318 Length=230163 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 |||||||| || |||||| ||||||||| ||||| || || ||| |||| | || Sbjct 42358 TTCGCCATCTACTTGGAACCGTGGCACGCGGATATCTTCGATTTCTTGGATCTCCGCAAA 42417 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 ||| |||| || ||| ||| || ||||||||||||| || || ||| | ||||| Sbjct 42418 AACCACGGAAAGGAGGAACAGAGGGCTCGTGACCTCTTCTTTGGGCTCTGGATTCCCGAC 42477 Query 249397 TTGTTCATGCGCCGCGTCAAGG 249418 || |||||| |||||||||| Sbjct 42478 TTATTCATGAAACGCGTCAAGG 42499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073702757194368