Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq230 93.3 4e-14 >seq230 Length=975444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 409/635 (64%), Gaps = 22/635 (3%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 ||||| ||||||| ||| | ||| ||||| ||||| ||||| || || || || || || Sbjct 390366 TTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTC 390307 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 14031 ||||| || ||||| |||||| | || | |||| || | || || || || | || Sbjct 390306 TCCATGAAGTCAAAAGGATTT-TCAACGTTGTACACCTTGTTGCATCCGAGCTCAAGAAG 390248 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||| || || | ||| || || |||| ||| || || | |||||| || || || Sbjct 390247 CAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAG 390188 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||| | | || | || || |||| ||| ||| || ||| | || Sbjct 390187 TCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGAT 390128 Query 14152 AATCGTAATAATTTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACACG 14207 | | || | || || ||| | | || | || || | || || || | Sbjct 390127 --TTGCAAAATCCTCTTTTC--GGACAACTTGTTGACCAAGTGCTTGTACATCAAGCATG 390072 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCC 14265 |||| || ||| | || || ||||| || | |||||| ||||| || ||||| Sbjct 390071 CAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAA--GTCAATCC 390014 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 14325 |||||||||||||| || || | ||| || || || || || |||||||||||| || Sbjct 390013 GGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAAT 389954 Query 14326 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG-AT- 14383 ||| || |||| ||| || || | | || |||| || | || || || | || || Sbjct 389953 TCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGC---GTTATCCGCATT 389897 Query 14384 -ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| || ||||||| | || || | || | || ||||||||| || || Sbjct 389896 GATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTT 389837 Query 14443 AAATA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | ||| | | || | | | ||||| |||||||| || | || || Sbjct 389836 GAAGAGGTTGTGGCGT-TCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTAAG 389778 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14536 |||| || |||||||||||||| | ||||||| Sbjct 389777 TTTCGCTATGAATGTTTTCCATAGCGACCTGAAAA 389743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482317708365680