Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq282 84.2 2e-11 >seq282 Length=398316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||| || || ||||| |||||||| ||| || || | |||| Sbjct 140565 AGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCT 140624 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||| ||||| ||| |||| | | ||| ||||| ||| | ||| ||||| || Sbjct 140625 TCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCT 140684 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | | | | ||||| || ||| || | ||| ||| | Sbjct 140685 TGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTC 140744 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| | || || ||||| |||||||||||| Sbjct 140745 TTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTTT 140780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379322612822370