Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq318 159 3e-34 seq275 104 2e-17 seq230 100 3e-16 seq282 95.1 1e-14 seq243 84.2 2e-11 >seq318 Length=230163 Score = 159 bits (176), Expect = 3e-34 Identities = 305/444 (69%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 |||||||| || || || || || || ||||| || ||||||||||| ||||||| Sbjct 42773 TACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTG 42714 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || ||||| | |||||||||||||| || || || || ||||| | ||||||| Sbjct 42713 GACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGAC 42654 Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG-TCGCACGTACCTGCCTTCTTC 23244 || ||||| || ||| | ||||| | || | | || | | ||||||| | Sbjct 42653 TCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCG-GAATTTGCCTTCAGC 42595 Query 23245 CTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGA 23304 |||||| || | |||||| ||||| || | || | |||||||||| || || | Sbjct 42594 CTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACA 42535 Query 23305 TTGCATCGG-ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 | ||| || ||||||||| ||||||||| | | | |||||| |||| || | | Sbjct 42534 CT-CATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGT 42476 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 | || ||||| || | |||| || || || || | | ||||| || ||| ||| | Sbjct 42475 CGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTT 42416 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | | |||||| || || || | ||||| |||||||| || | ||| | ||| || | Sbjct 42415 TGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGG 42356 Query 23484 CGCCCGGTCTCTTATTGCCGCCCT 23507 | || || || || ||||| |||| Sbjct 42355 CTCCTGGCCTTTTGTTGCCTCCCT 42332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 232/350 (66%), Gaps = 11/350 (3%) Strand=Plus/Minus Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591 || || || ||||| || || || || ||||| |||||||||| || || ||||| | | Sbjct 43887 CCAAGAATTTGAGCAGTGGAGGCCGTGGGCATGGGCGCCAACAAAAGGGAATTTCTGATG 43828 Query 22592 CC--GTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGGACGGCGT 22647 || |||| |||| ||| || ||||| |||| ||| | ||||| | || || Sbjct 43827 CCATGTGCCTTGAC-TTTGGCT-TTGAGGTCATC--CCAATTGTGTAGATCTGTGGGAGT 43772 Query 22648 CACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGT 22707 ||||| |||||| ||||| || || | || | |||||| ||| || || || Sbjct 43771 GACATT---CCACATGTCGTACTGGAAGAGTCCTTTAGAGACCGGGCAGCCCTCATAAGT 43715 Query 22708 TTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 | || || || | | | || | || ||||| |||||||| || || || || || Sbjct 43714 CTGATATGGTCCCAACTTTTCCGCTATCTCACAGCTGGCCTCCAAAGCTCCATAGTAAAT 43655 Query 22768 AGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCAT 22827 ||||||||||| | |||||| | ||| | |||||| | || ||||| Sbjct 43654 GGTCTCGAAGATCTGCTTGTTAAGGAGCTGGGCCTCTGGGCTTTCAAATGGGTAGCGCAT 43595 Query 22828 CATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 || | ||| ||||| || | ||||| || || || || || || |||| Sbjct 43594 CAAGATGAAGGCGTCGGCTAAGCCCTGCACTCCAATGCCAATTGGGCGGT 43545 >seq275 Length=453286 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||| |||| || || ||||||||| | || ||||| ||||| Sbjct 384524 CATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTC 384465 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||| ||||| | || |||||||| ||| | || || || || Sbjct 384464 CGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 384405 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || ||||||||||| || ||||| || ||| | || || || Sbjct 384404 GCAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAA 384345 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || || |||||||| |||| Sbjct 384344 CATCCAGAAGGAGTCTACTCTTCACTTGGT 384315 >seq230 Length=975444 Score = 100 bits (110), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAA-AAAGGCAGA 57595 |||||||| || || || || ||||| || || ||||| |||||||| |||| || Sbjct 389382 AGATTTGTGATCTTGCCTATCAAATATGACGATATCTGGAAAATGTACAAGAAAGCCATG 389441 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 || | || ||||| | ||| ||| | ||| |||| | ||| || ||||||| Sbjct 389442 GCCAGC-TTCTGGACTGCCGAGGAAATTGACTTGTCCATGGACTTGGCAGATTGGGCCAA 389500 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 | || || || | | || || || ||||| || || || || ||||| ||||| Sbjct 389501 GTTGAAGGACGACGAAAAGCACTTCATCAAGCACGTCTTAGCCTTCTTTGCCGCCTCCGA 389560 Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775 || ||||| || ||||| | || ||||| || |||||||| ||| | | ||||| Sbjct 389561 CGGCATTGTCAATGAGAACCTTGTTGAAAGGTTCATGCAAGAAGTTCAAATTCCTGAGGC 389620 Query 57776 GAGATGCTTTTACGGATTTCAAGT 57799 ||||||||||| || || ||||| Sbjct 389621 CAGATGCTTTTATGGCTTCCAAGT 389644 >seq282 Length=398316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| ||||| ||| | || || ||| | ||| Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||| || || | || || || || Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || || || ||||| | ||||| || || || |||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||||| ||||||||||| |||||| | |||| || || Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGG 140322 >seq243 Length=773012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || ||| |||| || || || || ||| |||| || || || || Sbjct 551982 CATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTC 552041 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||||| ||||| | || ||| ||||| || | || || ||||| Sbjct 552042 CGATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCA 552101 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || ||||| || ||||| | || || ||| |||| || || || Sbjct 552102 GCAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAA 552161 Query 31372 CATTCAAAAAG 31382 ||||||||||| Sbjct 552162 CATTCAAAAAG 552172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740623557920