Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq239 141 2e-28 seq230 86.0 1e-11 >seq239 Length=840022 Score = 141 bits (156), Expect = 2e-28 Identities = 384/580 (66%), Gaps = 16/580 (3%) Strand=Plus/Minus Query 35153 GATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGA 35212 ||| | || || || ||||| ||||| |||||| | |||||| ||||| ||| || Sbjct 248408 GATCGGACAGGTACCGGAACCAAGTCCATATTTGGAGCTCAAATGCGGTTCAATCTGCGT 248349 Query 35213 GACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAA 35272 || | | | | || | | || ||||| |||| || ||| |||| ||| |||||| Sbjct 248348 GATGGAATTTTCCCCTTATTGACAACCAAAAAAACCTTTTGGCGAGGCATTGCAGAAGAA 248289 Query 35273 CTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACAC 35332 || | ||||||||| | || || | | ||| |||||| | | ||||| | | Sbjct 248288 CTTTTTTGGTTCATCCGTGGTTCAACCAATGGCAATGAATTGTCTGAAAAGAACGTCCGG 248229 Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| | || ||||| || | || ||| |||||| ||| || || | | | Sbjct 248228 ATTTGGGATGCCAATGGATCAAGAGACTTTCTGGACAAGCAAGGATTGACTCATCGTGAA 248169 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA-TGA 35451 | ||| | || || || ||||||||||||||||||||||||||||| ||||| | Sbjct 248168 GTCAATGATCTTGGTCCTGTTTACGGATTCCAATGGCGTCATTTTGGTGCGGAATACCAA 248109 Query 35452 TACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT------GGCCAATATACT 35505 || || | | ||||| |||| | ||| | ||||| | || | || || Sbjct 248108 GACATG-CATGCTGATTACTCTGGCCAAGGTGTGGATCAGCTCAAGGAGGTC-ATTGACA 248051 Query 35506 AAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTAT 35565 ||| | ||| | || || ||||| || |||| || ||| || ||||| || | Sbjct 248050 AAA----TTAAGA-ACAAGCCGGATGACAGGCGGATCATCATGTGTGCTTGGAACCCGAC 247996 Query 35566 GGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGAC-TGCTCAATTTTATGTGGCTA 35624 || || | |||||| | || || || || || | |||||||||||| ||||| | Sbjct 247995 TGACCTGAGCAAAATGGCTTTGCCACCTTGTCA-TTGTCTTGCTCAATTTTACGTGGCCA 247937 Query 35625 ATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 |||| || | ||||| ||||| || || || ||| | || || || || || | Sbjct 247936 ATGGTGAGCTCAGCTGCCAATTGTACCAAAGATCCGCTGATATGGGATTAGGTGTACCTT 247877 Query 35685 TCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC 35724 |||| |||||||| || | ||| |||||||| |||| || Sbjct 247876 TCAACATTGCATCTTATGCCCTTTTGACTCATATGATTGC 247837 >seq230 Length=975444 Score = 86.0 bits (94), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 101856 AGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCA-ATAACGATTTG---GCGGAA 101911 ||||||||| | ||||| | || ||||| ||| || |||||| || || ||| Sbjct 389865 AGAAGAAGGCCAAATGGGCGTTGAACTGGAT-CAATGCGGATAACGCTTCCTATGCAGAA 389923 Query 101912 CTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATT 101971 |||||| || || ||| |||| |||||||| |||||| || || || ||||| Sbjct 389924 AGAATTGTCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCATT 389983 Query 101972 TTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCT 102031 |||||| | ||||| | || | |||| || | || | | ||| || || || || Sbjct 389984 TTCTGGCTGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAACGAATTGATCTCC 390043 Query 102032 AGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGT 102071 || ||||||||| | ||| |||||||||||| || ||| Sbjct 390044 AGAGACGAAGGTTTGCATACGGACTTTGCATGCTTGATGT 390083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989525346737830