Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq230 163 4e-35 seq318 143 3e-29 >seq230 Length=975444 Score = 163 bits (180), Expect = 4e-35 Identities = 423/640 (66%), Gaps = 11/640 (2%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| ||||| |||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 390379 CATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATC 390320 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 | || || || |||||||| ||||| ||||| ||| ||||| | || || |||| Sbjct 390319 AAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCC 390260 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 | ||| || ||||| || ||||| | | || || ||||| || | ||| Sbjct 390259 GAGCTCAAGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATT 390200 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || |||||| | || | || |||| || || || |||||| || || Sbjct 390199 CATGCCAATGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGC 390140 Query 33518 ATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGA--TGT--AATAAATGTTTAA 33573 || | | | | || |||| |||| | ||| | || || || Sbjct 390139 --TTCGCAAACGATTTGCAAAATCCTCTTT--TCGGACAACTTGTTGACCAAGTGCTTGT 390084 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||||||| ||||| || || |||| ||| |||||||| || |||||||| | Sbjct 390083 ACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGA 390024 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||||||||| | || ||||| || ||||| || |||| || || ||||| Sbjct 390023 AAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGG 389964 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 ||||||| |||||||| |||| ||| || || | || ||| ||| |||| ||| | | Sbjct 389963 AAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTAT 389904 Query 33754 ---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| || ||||| | ||||||||| | || ||||| ||||| | Sbjct 389903 CCGCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAA 389844 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | || || ||||| | || ||| |||||| | || ||||| || | |||| Sbjct 389843 TTGCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGAC 389784 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33910 | || |||| |||||||||||| || || | |||||| Sbjct 389783 TGTAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq318 Length=230163 Score = 143 bits (158), Expect = 3e-29 Identities = 294/435 (68%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| || || ||||| || || || ||||| || || || ||| | Sbjct 42764 ATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTGGACTTGCGG 42705 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || || ||||| || || || | ||||||||||| |||||||| || || || || Sbjct 42704 TTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGACTCAATGATG 42645 Query 63117 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTT--GTATCTCCTTTCTCTTTCGTATA 63174 || ||| || || ||||||| | | | || | || | | ||| |||||| Sbjct 42644 GCAGCCCAAACCTCTTGAGCCTTGACTT--GCTTGCGGAATTTGCCTTCAGCCTCGTATT 42587 Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234 ||||||| || || || || ||||| | | |||||| ||||| |||| | Sbjct 42586 TCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACACTCATGGG 42527 Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 ||||||| | |||| |||| ||||| || |||||||| || | || ||||||| Sbjct 42526 GACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGTCGGGAATCC 42467 Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 | || | | || || || | | || |||||||| ||||| || || |||| Sbjct 42466 AGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTTTGCGGAGAT 42407 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | | ||| | | ||||| | ||||||||||||||||| ||||| | |||| |||| Sbjct 42406 CCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGGCTCCTGGCC 42347 Query 63415 GTTTGTTTCCTCCCT 63429 |||||| ||||||| Sbjct 42346 TTTTGTTGCCTCCCT 42332 Score = 102 bits (112), Expect = 1e-16 Identities = 221/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 63563 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 |||||| || || ||||| || || || || ||||| ||| | || ||| ||| | | Sbjct 41836 TTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATGTCCTCAATGGAATCCCCACT 41777 Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGT 63682 |||| | | ||||| || || || | ||| | | | |||| | ||||| || | ||| Sbjct 41776 CATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGT 41717 Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT-AGCTGAGT 63741 |||||||||||| || || ||| || || | | || || || ||||| | | | | Sbjct 41716 AGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCA-T 41658 Query 63742 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 | ||||| |||||| || || ||||| | ||| | ||| ||||| || | ||| | Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 63802 CAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 | | |||| || || || | ||| || ||||||||||| || ||||| || | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 63862 TGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| ||||| || ||||| | ||| Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAAT 41510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||| | ||||| ||||| | || || ||||| || || | | ||||||||||| Sbjct 44463 CTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCC 44404 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||| || || |||| ||| ||||| || |||||| | || |||| | || | || Sbjct 44403 CGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATTGGG 44344 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 || || || || | |||| || || || || ||||| |||||||| | ||| || | Sbjct 44343 GTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGCCGA 44284 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 ||| || | || || ||||| || ||||| | ||||| || Sbjct 44283 CATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTA 44239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629781180797280