Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq230 114 1e-20 >seq230 Length=975444 Score = 114 bits (126), Expect = 1e-20 Identities = 303/457 (66%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||| ||||||| ||| ||| || ||||| || || || || || || || || | Sbjct 390367 CTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTT 390308 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| ||| ||||||||| | || ||| | || || | || || | ||| | Sbjct 390307 CTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCCGAGCTCAAGAAG 390248 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 |||| || ||||| | | || ||||||| ||| || | |||||| || || || Sbjct 390247 CAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAG 390188 Query 11518 ATCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AATGA 11573 || || || | || | |||| ||||| |||| |||| || || || || || Sbjct 390187 -TCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGA 390129 Query 11574 TTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACG 11633 || | | | | ||| | | | || | || || || |||| || || | Sbjct 390128 TTTGCAAAATCCTCTTTTCGGACAAC--TTGTTG-ACCAAGTGCTTGTACATCAAGCATG 390072 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||| || ||| |||||||||||||| || | ||| || || || ||||||| Sbjct 390071 CAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGG 390012 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 ||||||||||||| || || | ||| || || || ||||| || |||||||| |||| Sbjct 390011 GCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTC 389952 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 | || || | || || || || | ||||||| |||| Sbjct 389951 CTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATA 389915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA-CATAAAATCTTT 12008 || ||| || ||||| || |||| ||||| | | || || || ||| || |||| Sbjct 389645 TACTTGGAAGCCATAAAAGCATCTGGCCTCAGGAATTTGAACTTCTTGCATGAAC-CTTT 389587 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 | | | |||||||| ||||| || || | ||||| || |||| | || || | Sbjct 389586 CAACAAGGTTCTCATTGACAATGCCGTCGGAGGCGGCAAAGAAGGCTAAGACGTGCTTGA 389527 Query 12069 TAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTA 12128 | |||| |||||||| | | || || ||||||| | || || | || || || | Sbjct 389526 TGAAGTGCTTTTCGTCGTCCTTCAACTTGGCCCAATCTGCCAAGTCCATGGACAAGTCAA 389467 Query 12129 CTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGAT 12188 ||| || | ||||| || || |||| | || || ||||||||||||||||| | || Sbjct 389466 TTTCCTCGGCAGTCCAGAAGCTGGCCATGGCTTTCTTGTACATTTTCCAGATATCGTCAT 389407 Query 12189 ACTTAATAGGGAAAATAACGAACCT 12213 | || ||||| || || || || || Sbjct 389406 ATTTGATAGGCAAGATCACAAATCT 389382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468497707553440