Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq230 156 6e-33 seq318 140 4e-28 >seq230 Length=975444 Score = 156 bits (172), Expect = 6e-33 Identities = 419/638 (66%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| ||||| |||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 390379 CATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATC 390320 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | || || || |||||||| || || ||||| ||| || || | || || |||| Sbjct 390319 AAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCC 390260 Query 35974 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033 | ||| || ||||| || |||||| | | || || ||||| || | ||| Sbjct 390259 GAGCTCAAGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATT 390200 Query 36034 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 ||| || || ||| | || | || |||| || || || ||||||| || || Sbjct 390199 CATGCCAATGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGC 390140 Query 36094 GTCTGTTATAATAG--ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151 || | || | | | || ||| || || || | | || || || Sbjct 390139 TTCGCAAACGATTTGCAAAATCCTCTTTTCGGACAACTTGTTGACCA--AGTGCTTGTAC 390082 Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 ||||| ||||| || || || | ||| |||||||| || ||||||||| || Sbjct 390081 ATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAA 390022 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 || | ||||||||| | || ||||| || ||||| || |||| ||||| ||| ||| Sbjct 390021 GTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAA 389962 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTG 36328 |||||||||||||| |||| || || || | || ||| ||| ||| || || | Sbjct 389961 AAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCC 389902 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 ||| ||||| || ||||| | ||||||||| | || ||||| ||| || || Sbjct 389901 GCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATT 389842 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || || ||||| | || ||| |||||| | || |||||||| | ||||| Sbjct 389841 GCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTG 389782 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 36486 || |||| |||||||||||| || || | ||||| Sbjct 389781 TAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq318 Length=230163 Score = 140 bits (154), Expect = 4e-28 Identities = 293/435 (67%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| || || ||||| ||||| || ||||| || || || ||| | Sbjct 42764 ATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTGGACTTGCGG 42705 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 || || || ||||| || || || | ||||||||||| |||||||| || || || || Sbjct 42704 TTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGACTCAATGATG 42645 Query 65910 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTT--GTATCTCTTTTCTCTTTCGTATA 65967 || ||| || || ||||||| | | | || | || | ||| |||||| Sbjct 42644 GCAGCCCAAACCTCTTGAGCCTTGACTT--GCTTGCGGAATTTGCCTTCAGCCTCGTATT 42587 Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 ||||||| || || || || ||||| | | ||||||| ||||| |||| | Sbjct 42586 TCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACACTCATGGG 42527 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||| | |||| |||| ||||| || |||||||| || | || ||||||| Sbjct 42526 GACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGTCGGGAATCC 42467 Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 66147 | || | | || | || | | || |||||||| ||||| || || |||| Sbjct 42466 AGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTTTGCGGAGAT 42407 Query 66148 CGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 | | ||| | | ||||| ||||||||||||||||| ||||| | |||| |||| Sbjct 42406 CCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGGCTCCTGGCC 42347 Query 66208 GTTTGTTTCCTCCCT 66222 |||||| ||||||| Sbjct 42346 TTTTGTTGCCTCCCT 42332 Score = 105 bits (116), Expect = 9e-18 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 66356 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 66415 |||||| || || ||||| || || || |||||||| ||| |||| || ||| | | Sbjct 41836 TTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATGTCCTCAATGGAATCCCCACT 41777 Query 66416 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 66475 |||| | | ||||| || || || | ||| | | |||| | ||||| || | ||| Sbjct 41776 CATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGT 41717 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT-AGCTGAGT 66534 |||||||||||| || || ||| || || | | || || || ||||| | | | | Sbjct 41716 AGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCA-T 41658 Query 66535 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 66594 | ||||| |||||| || || ||||| | ||| | ||| ||||| || | ||| | Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 66595 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 ||| ||| || || || | ||| || ||||||||||| || ||||| || | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 66655 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 ||| ||||| || ||||| | ||| | ||||| || Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAATGGCGGAGTTCAG 41498 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 |||||| | ||||| ||||| | || || ||||| || || | | ||||||||||| Sbjct 44463 CTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCC 44404 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||| || || |||| ||| ||||| || |||||| | || |||| | || | || Sbjct 44403 CGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATTGGG 44344 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 || || || || | |||| || || || || ||||| |||||||| | ||| || | Sbjct 44343 GTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGCCGA 44284 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 65053 ||| || | || || ||||| || ||||| | ||||| || Sbjct 44283 CATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTA 44239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658134741157840