Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq239 127 2e-24 >seq239 Length=840022 Score = 127 bits (140), Expect = 2e-24 Identities = 272/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 20937 TGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCC 20996 ||||| ||| || || || || || | ||| || ||||||||||| | ||| || Sbjct 247768 TGGTTCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCG 247827 Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 || || ||||| |||| || |||| ||||| || || ||||| || || || || Sbjct 247828 GTCACATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCT 247887 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116 | ||||| || ||||| || ||||||| |||||| ||||| || ||||||||| Sbjct 247888 AATCCCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAA 247947 Query 21117 AACTGACACAAAAC-GTGACAAGGAGGGAGAGCCA-TCCGCGCGAGGTCCGCGGGGTTCC 21174 || ||| ||| || |||||||| || | ||||| | || | ||||| | ||||||| Sbjct 247948 AATTGA-GCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTC-AGGTCAGTCGGGTTCC 248005 Query 21175 ACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAAC 21234 | || ||||| | ||| |||| || | ||| | |||||| || | || | Sbjct 248006 AAGCACACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCT 248065 Query 21235 GCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT--GTACTCCGCCCC 21292 ||||| ||||| || || || ||| | || | || || ||| ||||| || Sbjct 248066 TGAGCTGATCCACACCTTGGCCAGAGTAATCAGCAT--GCATGTCTTGGTATTCCGCACC 248123 Query 21293 AAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 |||||| | ||| ||||| ||||| || || || ||||| Sbjct 248124 AAAATGACGCCATTGGAATCCGTAAACAGGACCAAGATC 248162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427751882256480