Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq230 156 6e-33 seq318 138 2e-27 >seq230 Length=975444 Score = 156 bits (172), Expect = 6e-33 Identities = 423/643 (66%), Gaps = 17/643 (3%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| ||||| |||||||||||||| || ||||| || ||||| || ||||| || || Sbjct 390379 CATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATC 390320 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | || || || |||||||| ||||| ||||| ||| || || | || || |||| Sbjct 390319 AAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCC 390260 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 | ||| || ||||| || |||||| | | || || ||||| || | ||| Sbjct 390259 GAGCTCAAGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATT 390200 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || || ||| | || | || |||| || || || |||||| || || Sbjct 390199 CATGCCAATGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGC 390140 Query 49896 ATCTGTTATAATAGATCT--AACGGTTTCTTCACTCGG-----TGGATGCAATAAATGTT 49948 || || ||| | || |||| |||| | | || | || || | Sbjct 390139 TTCGC----AAACGATTTGCAAAATCCTCTTT--TCGGACAACTTGTTG-ACCAAGTGCT 390087 Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 | ||||||| ||||| || || |||| ||| |||||||| || | ||||||| Sbjct 390086 TGTACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGC 390027 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 || || | ||||||||| | || ||||| || ||||| || |||| ||||| | Sbjct 390026 TGAAAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTC 389967 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 | |||||||| |||||||| |||| || || || |||| ||| ||| |||| ||| Sbjct 389966 CGGAAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGT 389907 Query 50129 TGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 | || || ||||| || ||||| | ||||||||| | || ||||| |||| Sbjct 389906 TATCCGCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTT 389847 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | || || || ||||| | || ||| |||||| | || ||||| || | | Sbjct 389846 CAATTGCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGA 389787 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 50288 |||| || |||| |||||||||||| || || | |||||| Sbjct 389786 GACTGTAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq318 Length=230163 Score = 138 bits (152), Expect = 2e-27 Identities = 293/436 (67%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||||||||| ||||||||||| || ||||| || || || ||| | Sbjct 42764 ATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTGGACTTGCGG 42705 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || || ||||| || || || | ||||||||||| |||||||| || || || || Sbjct 42704 TTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGACTCAATGATG 42645 Query 79789 GCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT---ATCTCTTTTCTCTTTCGTAT 79845 || ||| || || ||||||| | | |||| || | ||| |||||| Sbjct 42644 GCAGCCCAAACCTCTTGAGCCTTGACTTG---CTTGCGGAATTTGCCTTCAGCCTCGTAT 42588 Query 79846 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA 79905 | || |||| || || || || ||||| ||| | ||||| ||||| || | Sbjct 42587 TTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACACTCATGG 42528 Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 |||||||| | |||| ||| ||||| || |||||||| || | || |||||| Sbjct 42527 GGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGTCGGGAATC 42468 Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025 || || | | || || || | | || || ||||| ||||| || || ||| Sbjct 42467 CAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTTTGCGGAGA 42408 Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT 80085 || | ||| | | ||||| | ||||||||||||||||| ||||| | |||| || Sbjct 42407 TCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGGCTCCTGGC 42348 Query 80086 CGTTTGTTTCCTCCCT 80101 | |||||| ||||||| Sbjct 42347 CTTTTGTTGCCTCCCT 42332 Score = 120 bits (132), Expect = 4e-22 Identities = 232/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 80235 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAAT 80294 |||||| || || ||||| || || || |||||||| ||| |||| ||| ||| || | Sbjct 41836 TTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATGTCCTCAATGGAATCCCCACT 41777 Query 80295 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 80354 |||| | | ||||| || || || | ||| | | |||| | ||||| || | ||| Sbjct 41776 CATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGT 41717 Query 80355 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT-AGCTGATT 80413 |||||||||||| || || ||| || |||| | || || || ||||| | | | | Sbjct 41716 AGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCA-T 41658 Query 80414 CTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 80473 | ||||| |||||| || || ||||| | ||| | ||| ||||| || | ||| | Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 80474 CGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 ||| ||| | || || | ||| ||| ||||||||||| || ||||| || | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 80534 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||| ||||| || ||||| | ||| | ||||| || Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAATGGCGGAGTTCAG 41498 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 |||||| | ||||| ||||| | || || ||||| || || | | ||||||||||| Sbjct 44463 CTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCC 44404 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||| || || |||| ||| |||||||| |||||| | || |||| | || | || Sbjct 44403 CGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATTGGG 44344 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 || || || || | |||| || || || || ||||| |||||||| | ||| || | Sbjct 44343 GTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGCCGA 44284 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 78932 ||| || | || || ||||| || ||||| | ||||| || Sbjct 44283 CATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTA 44239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718227266106640