Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq230 105 6e-18 >seq230 Length=975444 Score = 105 bits (116), Expect = 6e-18 Identities = 413/636 (65%), Gaps = 24/636 (4%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| ||||||| ||| | ||| ||||| ||||| ||||| || || || || || || Sbjct 390366 TTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTC 390307 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| || ||||| |||||| | || | |||| || | || || || || | || Sbjct 390306 TCCATGAAGTCAAAAGGATTT-TCAACGTTGTACACCTTGTTGCATCCGAGCTCAAGAAG 390248 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||| ||||| | | ||| || || |||| ||| || || | |||||| || || || Sbjct 390247 CAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAG 390188 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | ||| | | || | || || |||| ||| ||| || || | || Sbjct 390187 TCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGAT 390128 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACACG 13875 ||| || | ||| || ||| | | || | || || | || || || | Sbjct 390127 --TTGCAAAATCCTCTTTTC--GGACAACTTGTTGACCAAGTGCTTGTACATCAAGCATG 390072 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCC 13933 |||| || ||| | || || ||||| || | |||||| ||||| || ||||| Sbjct 390071 CAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAA--GTCAATCC 390014 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 |||||||||||||| || || | ||| || || || ||||| ||||||||||| || Sbjct 390013 GGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAAT 389954 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG-AT- 14051 ||| || |||| ||| || || | | || |||| || | || || || | || || Sbjct 389953 TCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGC---GTTATCCGCATT 389897 Query 14052 -ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| || ||||||| | || || | || | || ||||||||| || || Sbjct 389896 GATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTT 389837 Query 14111 AAATAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | | | ||| | | ||| ||||| |||||||| || | || || Sbjct 389836 GAAGAGGTTGTGGCGTTC-CGCGGGATCTT-TGATGTAGGTATCAATGAGGAGACTGTAA 389779 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204 |||| || |||||||||||||| | ||||||| Sbjct 389778 GTTTCGCTATGAATGTTTTCCATAGCGACCTGAAAA 389743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479700259728400