Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq230 102 8e-17 >seq230 Length=975444 Score = 102 bits (112), Expect = 8e-17 Identities = 411/635 (65%), Gaps = 22/635 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| ||||||| ||| | ||| ||||||||||| ||||| || || || || || || Sbjct 390366 TTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTC 390307 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| || || || |||||| | || | |||| || | || || || || | | Sbjct 390306 TCCATGAAGTCAAAAGGATTT-TCAACGTTGTACACCTTGTTGCATCCGAGCTCAAGAAG 390248 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||| ||||| | | ||| || || |||| ||| || || | |||||| || || || Sbjct 390247 CAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAG 390188 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | ||| | | ||| | || || |||| ||| ||| || ||| || Sbjct 390187 TCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCA---AAC 390131 Query 13608 AATCTTAATAATG-TCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACAC 13662 || | | ||| || || ||| | | || | || || | || || || Sbjct 390130 GATTTGCAAAATCCTCTTTTC--GGACAACTTGTTGACCAAGTGCTTGTACATCAAGCAT 390073 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATC 13720 ||||| || ||| | || || ||||| || | |||||| ||||| || |||| Sbjct 390072 GCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAA--GTCAATC 390015 Query 13721 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATA 13780 | |||||||||||||| || || | ||| || || || || || |||||||||||| | Sbjct 390014 CGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAA 389955 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT--TGTTTGA 13838 |||| || |||| ||| || || | | || |||| || | || || || | ||| Sbjct 389954 TTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCCGCATTG- 389896 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| || ||||||| | || || | || | || |||||| ||||| || Sbjct 389895 -ATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTT 389837 Query 13899 GAATA-AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||| | ||| | | || | | | ||||| |||||||| || | || || Sbjct 389836 GAAGAGGTTGTGGCGT-TCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTAAG 389778 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAA 13992 |||| || |||||||| ||||| | ||||||| Sbjct 389777 TTTCGCTATGAATGTTTTCCATAGCGACCTGAAAA 389743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478561125602640