Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq318 141 1e-28 seq230 140 4e-28 >seq318 Length=230163 Score = 141 bits (156), Expect = 1e-28 Identities = 310/462 (67%), Gaps = 2/462 (0%) Strand=Plus/Minus Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783 |||||||| || | ||| | || || || ||||| || || ||||| ||||| Sbjct 42792 TACCTCATCAGGCGAGCTATACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGT 42733 Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843 || ||||| || || || ||| ||| || || ||||| || || ||| | ||||| Sbjct 42732 GCCCAAATTCTGCTGGTTGGACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGT 42673 Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT 71903 |||||| |||||||| || || || || || ||| || || ||||||| | | || Sbjct 42672 ACCAGTCTCAATCTGCGACTCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTT 42613 Query 71904 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGC 71963 | || | ||| ||||||| || |||| || || || || ||||| || Sbjct 42612 GCGGAATTTGCCTTCAGCCTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCA-GC 42554 Query 71964 ATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022 | | | | ||||| ||||| |||| |||||||| | |||| ||| || || | Sbjct 42553 AGTCGGCCAATCCCGGACACTCATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGA 42494 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCT 72082 | |||||||| || | || |||||||| || | | || || || | | || || | Sbjct 42493 CGCGTTTCATGAATAAGTCGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTT 42434 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 |||| ||||| || || ||||| | ||| | | ||||| | |||||||||| Sbjct 42433 CCTCCTTTCCGTGGTTTTTGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTT 42374 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCT 72184 ||||||| ||||| | |||| |||| |||||| ||||||| Sbjct 42373 CCAAGTAGATGGCGAAGGCTCCTGGCCTTTTGTTGCCTCCCT 42332 Score = 102 bits (112), Expect = 1e-16 Identities = 221/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 72318 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 72377 |||||| || || ||||| || || || |||||||| ||| |||| || ||| | | Sbjct 41836 TTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATGTCCTCAATGGAATCCCCACT 41777 Query 72378 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 72437 |||| | | ||||| || || || | ||| | | |||| | ||||| || | ||| Sbjct 41776 CATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGT 41717 Query 72438 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT-AGCTGATT 72496 |||||||||||| || || ||| || |||| | || || || ||||| | | | | Sbjct 41716 AGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCA-T 41658 Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556 | ||||| ||| || || || ||||| | ||| | ||||||||| || | ||| | Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 72557 CGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616 ||| ||| | || || | ||| || ||||||||||| || ||||| || | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 72617 TGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| ||||| || ||||| | ||| Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAAT 41510 >seq230 Length=975444 Score = 140 bits (154), Expect = 4e-28 Identities = 418/642 (65%), Gaps = 15/642 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| ||||| |||||||||||||| || ||||| || ||||| || || || || || Sbjct 390379 CATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATC 390320 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 | || || || |||||||| ||||| ||||| ||| || || | || || |||| Sbjct 390319 AAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCC 390260 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 | ||| || ||||| || |||| | | || || ||||| || | ||| Sbjct 390259 GAGCTCAAGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATT 390200 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || || ||| | || | || |||| || || || ||||||| || || Sbjct 390199 CATGCCAATGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGC 390140 Query 42001 GTCTGTTATAAT-----AGATCTTACTGTTTCTTCA-CTCGGTGGATACAATAAATGTTT 42054 || | || | ||| | || || || || | || | || || || Sbjct 390139 TTCGCAAACGATTTGCAAAATCCT-CTTTTCGGACAACTTGTTG-----ACCAAGTGCTT 390086 Query 42055 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGA 42114 ||||||| ||||| || || |||| ||| || ||||| || ||||||||| Sbjct 390085 GTACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCT 390026 Query 42115 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC 42174 || || | ||||||||| | || ||||| || ||||| || || | ||||| ||| Sbjct 390025 GAAAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCC 389966 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 |||||||| |||||||| |||| || || || | || ||| ||| |||| || | Sbjct 389965 GGAAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTT 389906 Query 42235 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || || ||||| || ||||| | ||||||||| | || ||||| ||||| Sbjct 389905 ATCCGCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTC 389846 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || || ||||| | || ||| |||||| | || ||||| || | || Sbjct 389845 AATTGCGTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAG 389786 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 ||| || |||| |||||||||||| || || | |||||| Sbjct 389785 ACTGTAAGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671100391375760