Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq318 174 2e-38 seq4548 149 9e-31 seq239 136 6e-27 seq275 87.8 3e-12 >seq318 Length=230163 Score = 174 bits (192), Expect = 2e-38 Identities = 316/461 (69%), Gaps = 6/461 (1%) Strand=Plus/Plus Query 96877 AGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACG 96936 |||| ||||| ||| ||||||| || | ||| ||||||||||||| ||||||||||| Sbjct 42332 AGGGAGGCAACAAAAGGCCAGGAGCCTTCGCCATCTACTTGGAACCGTGGCACGCGGATA 42391 Query 96937 TTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC---GAGCCAGGG 96993 | || || || | || | ||||||||| || | |||| || | || | | Sbjct 42392 TCTTCGATTTCTTGGATCTCCGCAAAAACCACGGAA---AGGAGGAACAGAGGGCTCGTG 42448 Query 96994 ACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCT 97053 || | || | || |||||| | || || || |||||||| |||||||| || || Sbjct 42449 ACCTCTTCTTTGGGCTCTGGATTCCCGACTTATTCATGAAACGCGTCAAGGAATTCGGAA 42508 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 |||||||| ||||| ||| | || || || || |||| |||||||||||||| | Sbjct 42509 TGTGGAGCCTCATGTGTCCCCATGAGTGTCCGGGATTGGCCGACTGCTGGGGCGAAGACT 42568 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCAC 97173 ||||| |||| | |||||| || ||| || | | | |||| | || | Sbjct 42569 TTGAGAGATTGTACGAGAAATACGAGGCTGAAGGCAAATTCCGCAAGCAAGTCAAGGCTC 42628 Query 97174 GAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 ||| | ||| |||||| | | | ||| | |||||||| ||||| || || |||| Sbjct 42629 AAGAGGTTTGGGCTGCCATCATTGAGTCGCAGATTGAGACTGGTACTCCTTATATGCTCT 42688 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| |||||| | | ||||||||||| ||| |||| | Sbjct 42689 ACAAGGACGCTTGCAACCGCAAGTCCAACCAGCAGAATTTGGGCACCATTAAGTGCTCAA 42748 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || |||||||| || |||||||| ||| || || ||| Sbjct 42749 ACCTCTGCACGGAGATCGTAGAGTATAGCTCGCCTGATGAG 42789 >seq4548 Length=2543 Score = 149 bits (164), Expect = 9e-31 Identities = 378/571 (66%), Gaps = 18/571 (3%) Strand=Plus/Minus Query 127204 GCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCA 127263 |||| || ||||| | ||||| ||||| ||||||| ||| | ||| |||| ||| Sbjct 2237 GCAACTAAACCCGCCACATGTGCCATATCAGCCATCAACAAAGCGCCACAATCATCAGCA 2178 Query 127264 ATCTCTCGGAATCGTCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATT 127323 |||| |||||| | || |||||| | | || ||| || || | || Sbjct 2177 ATCTTCCGGAATTTTGCGTAATCCAAGTTTCTTGCGTAACAAGACACTCCAGCCACAATC 2118 Query 127324 AGCCTAGGTTTGAATAGATTGGCACTCTCGGC--AAGTTTGGCATAGTCGACGAGTCCAG 127381 | || || ||||| || ||||| | | || ||| || |||| || | || || | Sbjct 2117 ATTCTGGGCTTGAAAAGTATGGCATTTTTAGCTAAAGCTT--CATAATCAATCAGACCTG 2060 Query 127382 TCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTG- 127440 ||| ||||| |||||||| |||| |||||| || | || || ||||| | || Sbjct 2059 TCTCCGGATCGACCTTGTATGGCAAAGATTCGAAGAAAATGGAAGTGGCGGAAATCTTCT 2000 Query 127441 -------CG----GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGA 127489 || |||||| || |||| ||| || |||||||||| ||| || ||||||| Sbjct 1999 TTTTGGCCGTGTAGAATCCATGAGTCAAGTGACCACCGTCGGGCAAATCCAGACCCATGA 1940 Query 127490 TTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGT 127549 | ||||| |||||| ||| | | ||||| ||||||||||||||| || || || | Sbjct 1939 TCCTACCATGCGGTCCAACCAAAGCCGTGTAGACGGCAAAGTTGGCCGGTGAACCTGAAT 1880 Query 127550 ACGGTTGTACACACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCT 127609 | | ||| ||| || ||||||| ||| || ||| ||||| ||| | ||||| Sbjct 1879 AAGCTTGAACATTGACACCCCATTGGGAGGGGTCCAACTTGAAAGCTTTTCTGGCTCGCT 1820 Query 127610 GCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGG 127669 ||||| | ||||| || || || | || || || |||||||| | ||| | Sbjct 1819 CATGTGCCAAGAGTTCAATTTTGTCAATGACTTCATTGCCTCCATAGTACCTGGCTCCAG 1760 Query 127670 GCCTACCCTCCGAGTACTTGTTGATG-AGACACGAACTCATGCATTCTCGCACCGGTAGA 127728 | || || ||||||||||| ||| | ||| || | || ||||| | |||| Sbjct 1759 GTTGTCCTTCGGAGTACTTGTT-ATGTAAACAAGATCCCAGACATTCCAGGACCGCGGTG 1701 Query 127729 GTGGTAAAGTTTTCCGATGCGATCAACTCTA 127759 ||||| |||||||| ||||||| |||| Sbjct 1700 GTGGTGAAGTTTTCACTAGCGATCATTTCTA 1670 >seq239 Length=840022 Score = 136 bits (150), Expect = 6e-27 Identities = 331/499 (66%), Gaps = 2/499 (0%) Strand=Plus/Minus Query 70070 GATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC-TG 70128 ||||| || || || ||||||||||| ||| | || | || | | || |||| || Sbjct 248162 GATCTTGGTCCTGTTTACGGATTCCAATGGCGTCATTTTGGTGCGGAATACCAAGACATG 248103 Query 70129 CGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAA 70188 | | | || || || || || ||||| ||||| | || ||||||||| | || Sbjct 248102 CATG-CTGATTACTCTGGCCAAGGTGTGGATCAGCTCAAGGAGGTCATTGACAAAATTAA 248044 Query 70189 GACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCA 70248 || ||| || || ||| ||||| | ||||| | ||||| || | || || | | Sbjct 248043 GAACAAGCCGGATGACAGGCGGATCATCATGTGTGCTTGGAACCCGACTGACCTGAGCAA 247984 Query 70249 AATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTC 70308 |||||| | ||||| ||||| ||| | ||||| |||||| | | |||| | | Sbjct 247983 AATGGCTTTGCCACCTTGTCATTGTCTTGCTCAATTTTACGTGGCCAATGGTGAGCTCAG 247924 Query 70309 ATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAG 70368 ||| | |||| || || || || ||||| | |||||||| || ||||||||| Sbjct 247923 CTGCCAATTGTACCAAAGATCCGCTGATATGGGATTAGGTGTACCTTTCAACATTGCATC 247864 Query 70369 CTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGT 70428 ||| | | ||||| || ||||||||||| | ||||| |||| | || || || Sbjct 247863 TTATGCCCTTTTGACTCATATGATTGCTCATGTGACCGGTTTGAAGACTGGAGACTTTGT 247804 Query 70429 ACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACT 70488 || ||| | ||||| ||||| || || || || || ||||| | || ||| || || Sbjct 247803 TCATACCCTCGGCGATGCTCATGTCTACTTGAACCATATCGACGCTTTGAAGACTCAGCT 247744 Query 70489 CGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGA 70548 ||||| || || | || || |||||||| | | | || || |||| || ||||| Sbjct 247743 TGAACGTGAACCTAAGCCGTTCCCCAAGCTTGTGATCAAGCGAAAGATTGAGAACATTGA 247684 Query 70549 CAGTTTTAAGTACGAAGAT 70567 || |||| |||||| Sbjct 247683 AGACTTCAAGTTTGAAGAT 247665 >seq275 Length=453286 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 134242 TCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTCGTCATCGGAATGG 134301 ||||||| || ||| || || || ||||| ||| | | | || || | | | ||| Sbjct 117000 TCACAAACCAATTGAGCAATCCGGTCACCTTTTTTAATTTCGAACTCAGCTTGAGCATGA 116941 Query 134302 TTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGACG 134361 || |||||||| || |||| |||||||||||| || | || || || || ||||| ||| Sbjct 116940 TTGAAGAGGACAACGCCAACGTTTCCAGTATAATCTTGATCAACTACTCCCGCTCCAACG 116881 Query 134362 TCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAAT 134402 ||||| || |||||||| ||| || || |||||||| Sbjct 116880 TCGATATGGTGCTTGGCTGAAAGTCCTGAGCGAGGAGCAAT 116840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741016348251760