Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq282 98.7 6e-16 seq275 91.5 9e-14 >seq282 Length=398316 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| ||||| ||||| || |||||||| || | || || ||| Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | |||||| ||| ||| || ||||||||||| || | ||| ||||| || || || | Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || |||||| || | ||| || || || || || Sbjct 140688 ATTTTGGCC---TTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTC 140744 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || || ||||| || || || |||||||| ||| Sbjct 140745 TTGCCGGTGAGAGTCTTGACAAAGATTTGCATTTTT 140780 >seq275 Length=453286 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || || | ||| ||||| || | || || || || || |||||||| ||||| Sbjct 384525 CCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAG 384584 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || ||||||||||| ||| ||| || |||||||||||||| | ||| Sbjct 384585 AGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGA 384644 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| || || || | | | ||| || || ||| || || || || | | Sbjct 384645 ATGCCCTCCTTGTCTTGGATCTTAGCC---TTGACATTTTCGATGGTATCAGAAGGCTCA 384701 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || | |||||||||||| || ||||| Sbjct 384702 ACCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || ||||| || || || ||||| || || | | | | Sbjct 384309 CGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCA 384368 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||| ||| || || ||||||||||| || | ||| ||||| || || Sbjct 384369 TCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTG 384428 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| || ||| || | ||| || || || Sbjct 384429 TCTTGGATCTTAGCC---TTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTG 384485 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || | ||| || ||||| ||||||||| Sbjct 384486 ATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATG 384524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318759627518148