Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq230 116 3e-21 >seq230 Length=975444 Score = 116 bits (128), Expect = 3e-21 Identities = 307/462 (66%), Gaps = 20/462 (4%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| ||||| | ||| | ||| ||||||||||| ||||| || || | ||||| || Sbjct 390366 TTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTC 390307 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTA---TTTTTTACACCCTAATTCTAGT 12976 ||||| || || |||||||||| ||| | ||| || || || || | || || Sbjct 390306 TCCATGAAGTCAAAAGGATTTT--CAAC-GTTGTACACCTTGTTGCATCCGAGCTCAAGA 390250 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | ||||| |||||| ||| ||| |||||||| ||| || || | ||||| || || Sbjct 390249 AGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATG 390190 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | | ||| | ||||| || | || | |||| ||||| || |||||| ||| Sbjct 390189 AGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACG 390130 Query 13097 ATGTCTCTTATTACGTTCTCTAAT-GGAGGATTTGAT----AGATGCTTAAACATCATAC 13151 || || | | |||| | ||| | ||| | | ||||| |||||| | Sbjct 390129 AT-----TTGCAAAATCCTCTTTTCGGACAACTTGTTGACCAAGTGCTTGTACATCAAGC 390075 Query 13152 ATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAG 13209 ||||||| || ||||| ||||| ||||| || | ||||| ||||| || | Sbjct 390074 ATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAA--GTCAA 390017 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || ||||| | ||||| || || | ||| || || || ||||| || ||||| || Sbjct 390016 TCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAA 389957 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATA 13311 |||||||| |||| || || || | | ||||| |||| Sbjct 389956 AATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATA 389915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430958101481652