Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq282 154 3e-32 seq243 145 2e-29 seq230 111 4e-19 seq252 109 1e-18 seq275 107 4e-18 seq285 98.7 2e-15 >seq282 Length=398316 Score = 154 bits (170), Expect = 3e-32 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 104323 TTTATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 |||||||| | || ||||| | | |||||| ||||| | || |||||||| ||||| Sbjct 140310 TTTATTTAGTGTCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATG 140369 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 |||||||| || | || | || ||||| ||||||||||| |||||||| | | ||| Sbjct 140370 TTATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGT 140429 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| ||||| ||||| ||||| || || ||||| || || || || || | || ||| Sbjct 140430 TGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCG 140489 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| | ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 140490 GAGGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq243 Length=773012 Score = 145 bits (160), Expect = 2e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| || |||||| | ||| | || || || ||||||||||| || |||| Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | ||| || || || ||||| ||||| || |||||||| ||||| || || ||||||| Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | |||||| ||| |||||||| || ||||| |||||||| || | ||||| || | Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 551992 AAATCTGCAT 551983 >seq230 Length=975444 Score = 111 bits (122), Expect = 4e-19 Identities = 146/202 (72%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 269088 AATGGGCTCTGAAATGGATAAACG---ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTT 269144 ||||||| |||| ||||| || | ||| ||| | || | |||||| | || |||| Sbjct 389877 AATGGGCGTTGAACTGGATCAATGCGGATAACGCTTCCTATGCAGAAAGAATTGTCGCTT 389936 Query 269145 TTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGA 269204 | || | || ||||| || |||||||| || |||||||| || || ||| |||||| Sbjct 389937 TCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCATTTTCTGGCTGAAGA 389996 Query 269205 AAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTT 269264 | |||| | ||||| ||||| |||||| ||||||||||| ||| |||||||||| Sbjct 389997 AGCGAGGATTGATGCCCGGATTGACTTTCAGCAACGAATTGATCTCCAGAGACGAAGGTT 390056 Query 269265 TACACTGCGACTTCGCTTGTTT 269286 | || ||||| || || || Sbjct 390057 TGCATACGGACTTTGCATGCTT 390078 >seq252 Length=615714 Score = 109 bits (120), Expect = 1e-18 Identities = 200/283 (71%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 238572 GCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACT--AGGCA 238629 ||| |||| ||||| | |||||| | || || || ||| || || ||| ||| | Sbjct 534278 GCCAAAACCCACGAAGATATTTGGAATGCGGCTCAAATCCAATTG--AAAACTGAAGGTA 534335 Query 238630 AAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTC 238689 |||| ||| | ||| | || ||||||||||| |||||||| || || ||||| || || Sbjct 534336 AAATTCATGGATTCATGCGGATGTATTGGGCCAAAAAGATCCTGGAGTGGACCCGAAATC 534395 Query 238690 CAAAGGAAGCTCTTAG-ATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACG 238748 || | ||||| ||| | || | | |||| | || || || ||| | || || || Sbjct 534396 CAGAAGAAGC-CTTGGAATTTGCTCTTTACTTTAATGACAAGTACTCTTTGGATGGATCG 534454 Query 238749 GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGT-GGATTACACGAT-AGGGCAT 238806 || |||| || | || ||||| |||||||| || ||| ||| | || ||| | ||| | Sbjct 534455 GACTCTAATGGTTTTGTTGGTTGCATGTGGTCCAT-TGTCGGAATTCATGATCAAGGC-T 534512 Query 238807 GGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTA 238849 || |||| ||||||| || |||||| | |||| |||||||| Sbjct 534513 GGACTGAACGACCTATTTTCGGAAAAATCAGATTTATGAATTA 534555 >seq275 Length=453286 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || ||||| | || || || | ||| || ||| Sbjct 384327 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCATCCTCCAATTGCTTGCCA 384386 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | || ||||| || || || || || || || || ||||| || || Sbjct 384387 GCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTG 384446 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||||| || || ||||| || || || ||||||||||| | || Sbjct 384447 ACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATCGTCTTACCAGTCAAAGTC 384506 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 384507 TTAACGAAGATTTGCAT 384523 >seq285 Length=381527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| | ||| || |||||||| || | | || ||||| ||||| ||||| || || Sbjct 34473 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTG 34414 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||| || || |||||||| | ||| || || || ||||| || || || Sbjct 34413 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATG 34354 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| || || |||||||||||| Sbjct 34353 GTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTTG 34315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151330155897208