Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq239 125 5e-24 >seq239 Length=840022 Score = 125 bits (138), Expect = 5e-24 Identities = 407/631 (65%), Gaps = 1/631 (0%) Strand=Plus/Plus Query 25322 CTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCT 25381 ||||| || | ||| || ||| ||||| || | | |||| | | | | || ||| Sbjct 247653 CTCCATGGCCAGATCTTCAAACTTGAAGTCTTCAATGTTCTCAATCTTTCGCTTGATCAC 247712 Query 25382 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATC 25441 || |||| || || | || || | || ||||||||||||| | || | || | Sbjct 247713 AAGCTTGGGGAACGGCTTAGGTTCACGTTCAAGCTGAGTCTTCAAAGCGTCGATATGGTT 247772 Query 25442 CAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAAC 25501 || |||||| ||||| || || || || || ||||| ||||| | | | ||||| || Sbjct 247773 CAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCAC 247832 Query 25502 GTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCC 25561 | ||| ||||| | || | || || || ||||| || ||||| || || || Sbjct 247833 ATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCC 247892 Query 25562 CATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACT 25621 ||| | | | || || ||||| | || || |||||| | | | ||||||||| | Sbjct 247893 CATAT-CAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATT 247951 Query 25622 GACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGC 25681 || | | || || || | ||| || || || ||| | |||||||| || | Sbjct 247952 GAGCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCAC 248011 Query 25682 ACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCT 25741 ||| |||||| | |||||| || || |||| | | || || | | | |||| Sbjct 248012 ACATGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCT 248071 Query 25742 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACC 25801 ||||||| || || ||||| || || |||||| ||| || || || |||| | Sbjct 248072 GATCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGAC 248131 Query 25802 TCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCT 25861 ||| ||||| ||||| || || || || || |||| | || || || || Sbjct 248132 GCCATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGATGAGTCAATCCTTGCT 248191 Query 25862 TATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 25921 | |||| ||||||||| || |||||||| ||||| ||| || ||| || || | | Sbjct 248192 TGTCCAGAAAGTCTCTTGATCCATTGGCATCCCAAATCCGGACGTTCTTTTCAGACAATT 248251 Query 25922 CTTTGGAGTTTGTGGACCCTCTGACGAACCA 25952 | ||| || || || || | || |||||| Sbjct 248252 CATTGCCATTGGTTGAACCACGGATGAACCA 248282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340118423254698