Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq239 168 8e-37 >seq239 Length=840022 Score = 168 bits (186), Expect = 8e-37 Identities = 401/589 (68%), Gaps = 28/589 (5%) Strand=Plus/Plus Query 6829 ATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATA 6888 ||||| | || || | ||||||||| || || ||||||| ||| || || | |||| | Sbjct 247765 ATATGGTTCAAGTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAA 247824 Query 6889 TCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACA 6948 | | |||||||| | || || || | |||||||| || | || ||||||||| Sbjct 247825 CCGGTCACATGAGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACA 247884 Query 6949 CCTAATCCCATATCTGCTGATCTTTGATAACATTGACA----AGATAAAATATTGTCTAT 7004 |||||||||||||| || |||||||| || |||| || || | | |||| | | Sbjct 247885 CCTAATCCCATATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCT-CACCATTGGCCA- 247942 Query 7005 AGCATAAAATTGACACAATAC-ATGACATGGAGGTAAA-ACAGCCTGATCTATATCAGAT 7062 | ||||||||| ||| || |||||| || || ||| || || || | |||| Sbjct 247943 --CGTAAAATTGA-GCAAGACAATGACAAGGTGGCAAAGCCATTTTGCTC-AGGTCAGTC 247998 Query 7063 GGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTA-- 7120 || ||||||||| ||| | || || || |||| || ||||| |||||||||| | Sbjct 247999 GGGTTCCAAGCACACATGATGATCCGCCTGTCATCCGG-CTTGTTCTTAATTTTGTCAAT 248057 Query 7121 TAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAAT 7180 | | ||| | ||||| | ||| || || |||| || ||| | | || | Sbjct 248058 GACCTCCTTG-AGCTGATCCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATT 248116 Query 7181 TAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT 7240 || |||||||| | |||||| || || |||| |||||| | |||| ||||||||| Sbjct 248117 CCGCACCAAAATGACGCCATTGGAATCCGTAAACAGGACCAAGATCATTGACTTCACGAT 248176 Query 7241 GATTAAATC----CTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGT 7296 || | |||| || || | ||| | | ||||||||| ||||||||||| | Sbjct 248177 GAGTCAATCCTTGCTTGTCCA--GAAAGT--CTCTTGATCCATTGGCATCCCAAATCCGG 248232 Query 7297 ACAGAtttttttGATA-AATTTAAAG-AATTTGTAGATCCTTTAAGGAACCATAAAAGTT 7354 || || |||| | | |||| | | ||| || || || | |||||| ||||||| Sbjct 248233 AC--GTTCTTTTCAGACAATTCATTGCCATTGGTTGAACCACGGATGAACCAAAAAAGTT 248290 Query 7355 CTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 ||||| | || || |||||||| || |||| || || ||||| ||||| Sbjct 248291 CTTCTGCAATGCCTCGCCAAAAGGTTTTTTTGGTTGTCAATAAGGGGAA 248339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595837543701600