Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq246 129 3e-25 >seq246 Length=701585 Score = 129 bits (142), Expect = 3e-25 Identities = 182/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 3874 AGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCA 3933 ||| || ||||| ||||||||||| ||||| || || || || ||||||||| | || Sbjct 347184 AGGAGTTCATTTCATGATGGCTGATGGTGGATTTAGCGTCGAAGGCCAAGAAAATCTCCA 347125 Query 3934 AGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACG 3993 |||||| | || ||| | | ||||| |||||||||||| | || ||| || |||| Sbjct 347124 AGAAATTCTGTCCAAACAACTCTATTTATGTCAATGTTTAGTCGCTTTGTCAATTGTACG 347065 Query 3994 AATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTT 4053 || |||||| || | || |||| |||||||| | ||||| || || || || || Sbjct 347064 AACTGGTGGACACTTCGTATGCAAACTTTTCGATCTCTTTACTCCGTTCAGCATCGGATT 347005 Query 4054 AGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCG 4113 | ||| ||||||| | | || ||| | || ||| ||||||| || | || | Sbjct 347004 GATTTATCTGATGTACCGTGCCTTCGATCAAGTCTGCATTCACAAACCAAATACGTCCAG 346945 Query 4114 ACCGGCCAATTCTGAA 4129 |||||||||||| ||| Sbjct 346944 ACCGGCCAATTCCGAA 346929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276538008080878