Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq249 93.3 2e-14 seq286 89.7 3e-13 seq255 87.8 9e-13 seq237 87.8 9e-13 seq245 86.0 3e-12 seq1316 82.4 4e-11 seq228 82.4 4e-11 >seq249 Length=634198 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| || |||||||||| || |||||||||||||||||||||||||| |||| Sbjct 54352 TTGGCCCGTGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAG 54411 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| ||||| Sbjct 54412 CTGAGCTAACGGGCC 54426 >seq286 Length=360367 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | ||||||| | |||||||||| |||||||||||||||||||| Sbjct 119017 AAGAAAAAAAGATATTGGCCATTAGGGGGATCGAACCCGTGACCTTCGCGTTATTAGCAC 119076 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| ||||||||| |||||| Sbjct 119077 GACGCTCTAACCAGCTGAGCTAAACGGCCGT 119107 >seq255 Length=569652 Score = 87.8 bits (96), Expect = 9e-13 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||| | |||||||||| |||||||||||||||||||||||| Sbjct 415238 AAAAAAGAATTTGGCCATTAGGGGGATCGAACCCGTGACCTTCGCGTTATTAGCACGACG 415179 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||| ||||||||| |||||| Sbjct 415178 CTCTAACCAGCTGAGCTAAACGGCCGT 415152 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| |||||||||||||| || Sbjct 418468 GGATCGAACCCGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAACGG 418409 Query 11528 CC 11529 || Sbjct 418408 CC 418407 >seq237 Length=870199 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| |||||||||||||||||||||||||||| |||| Sbjct 535066 TTGGCCCGTAGGGGGATCGAACCCGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 535125 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| ||||| Sbjct 535126 CTGAGCTAACGGGCC 535140 >seq245 Length=708296 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| || Sbjct 670189 GGATCGAACCCGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAAACGG 670130 Query 11528 CCGT 11531 |||| Sbjct 670129 CCGT 670126 >seq1316 Length=2204 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| || Sbjct 62 GGATCGAACCCGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAAACGG 3 Query 11528 CC 11529 || Sbjct 2 CC 1 >seq228 Length=1206555 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| || Sbjct 127773 GGATCGAACCCGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAAACGG 127714 Query 11528 CC 11529 || Sbjct 127713 CC 127712 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261476457289576