Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq282 129 5e-25 seq275 127 2e-24 seq311 107 2e-18 seq243 102 7e-17 seq285 95.1 1e-14 >seq282 Length=398316 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| ||||| |||||||| | ||| |||||||||| || ||| ||| Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || ||||||| || | |||||||||||| ||||| || || ||||| | Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| ||| ||||| | | || || || | || ||||| || Sbjct 140688 ATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTG 140747 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || |||||||| ||||| Sbjct 140748 CCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||||||| || | || | || | ||| ||||| ||||| | |||||| || Sbjct 140321 TCCACCTCTCAAACGAAGTACAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGA 140380 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||| || || ||||||||| |||| || || | ||| ||||||||||| Sbjct 140381 CAATGTGCGGCCATCTTCGAGTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGG 140440 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| || |||||||| | || || ||||| ||| | | ||||| | | || || Sbjct 140441 AATTCCCTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCAC 140500 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || ||||| || || || |||||||| ||||| Sbjct 140501 CTCCAAGGTAATCGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq275 Length=453286 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| ||||||| ||| |||||||| | ||||||||||| || | || | Sbjct 384517 TTTGCATGCCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGT 384576 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||| || || || ||||||| || | |||||| | Sbjct 384577 AGTCAGAGAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGT 384636 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| || || ||||| | || || |||||||| ||| || |||| Sbjct 384637 CTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAG 384696 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| |||||||| | |||||| || ||||||||||| Sbjct 384697 GCTCAACCTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 Score = 102 bits (112), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | |||||| ||||| || | ||| || || | | || || | Sbjct 384309 CGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGAGTACGCC 384366 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||| || || || | ||||| || | |||||||||||| ||||| || || | Sbjct 384367 CATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCT 384426 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || |||||||| | | || || | | || || |||| |||| Sbjct 384427 TGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGA 384486 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| | ||| || || ||||| ||||||| Sbjct 384487 TCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCATGC 384525 >seq311 Length=259814 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| ||| || | ||||| || ||||| |||||||| || | || || ||| Sbjct 106093 CCTCCTCGCAAACGTAGAACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGAG 106152 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||||| || || ||| ||||||| || | |||||||||||| ||| Sbjct 106153 AGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 106212 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||||||| ||||| | || || |||||||| Sbjct 106213 ATACCTTCCTTGTCTTGGATCTTAGCCTTGAC 106244 >seq243 Length=773012 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 ||||| | ||| || || |||| |||| | |||||| || ||||||||| | || || Sbjct 552170 TTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAATC 552111 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 || |||||||| ||||||||||| || || || || | || || |||||||| || Sbjct 552110 AACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCG 552051 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | ||| || | | || || || | || ||||| || || || | |||||| || || Sbjct 552050 ATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGAAA 551991 Query 95000 ATCTGCATG 95008 ||||||||| Sbjct 551990 ATCTGCATG 551982 >seq285 Length=381527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || || ||||||| || | |||||||||||||||||| || || ||| Sbjct 34473 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTG 34414 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | ||||||| | | || || || | |||||| Sbjct 34413 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATG 34354 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || ||||| || || |||||||| Sbjct 34353 GTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCAT 34319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448265277561360