Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq250 223 5e-54 seq229 208 1e-49 seq253 187 4e-43 >seq250 Length=628149 Score = 223 bits (246), Expect = 5e-54 Identities = 212/271 (78%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | | || |||||||||||||| |||||||| || || || Sbjct 419151 CGCCAAGCGTCATCGCAAAGTTTTGCGTGATAACATCCAAGGTATCACCAAACCCGCCAT 419210 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| ||||||||||| ||||||||| ||||||| ||| |||| ||||||| Sbjct 419211 TCGTCGTTTGGCGCGTCGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAGAC 419270 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| | ||||| | | ||| |||| ||||||| || ||| ||||| Sbjct 419271 CCGTGGTGTCTTGAAGGTGTTCCTTGAAAACGTCATCCGTGATGCTGTCACCTACACCGA 419330 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| | |||||| |||||||||| | || | ||||| Sbjct 419331 ACACGCCAAGAGGAAGACCGTCACCGCTATGGATGTCGTCTATGCCCTCAAGAGGCAAGG 419390 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||||| | ||||| || || ||||| || Sbjct 419391 CCGTACCCTCTATGGATTCGGCGGTTAAGCT 419421 >seq229 Length=999787 Score = 208 bits (230), Expect = 1e-49 Identities = 209/269 (78%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||||| | ||| | || |||||||||||||| ||||||||||| || | Sbjct 307505 CGCTAAGCGTCATCGCAAAGTCT-TGCGTGATAACATCCAAGGTATCACCAAGCCCGCCA 307563 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||| |||| | |||||||| ||||||||| ||||||| ||| |||| || |||| Sbjct 307564 TTCGCCGTTTGGCGAGACGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTACGAGGAGA 307623 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| ||| ||| |||| |||||| || ||| |||| Sbjct 307624 CCCGAGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACACCG 307683 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || | |||||||||||| | |||||| |||||||||| | || | |||| Sbjct 307684 AACACGCCAAGAGGAAGACTGTCACCGCTATGGATGTCGTCTATGCCCTCAAGAGGCAAG 307743 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || ||| ||||| Sbjct 307744 GCCGTACTTTGTACGGATTCGGAGGTTAA 307772 >seq253 Length=605553 Score = 187 bits (206), Expect = 4e-43 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| ||||||||||| || || || ||| |||| ||||||||||| Sbjct 201004 CGTGATAACATCCAAGGTATCACCAAGCCCGCCATTCGCCGTTTGGCGCGTCGTGGTGGT 200945 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| ||| |||| || |||| || | ||| | ||| | ||||| Sbjct 200944 GTCAAGCGTATCTCTGGCTTGATCTACGAGGAGACCCGAGGTGTCCTCAAGGTGTTCCTT 200885 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| ||| || ||| ||||| ||||| || | |||||||||||| Sbjct 200884 GAGAACGTCATCCGTGACGCTGTCACCTACACCGAACACGCCAAGAGGAAGACTGTCACC 200825 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| |||||||||| | || | ||||| |||| | || || || ||| || Sbjct 200824 GCTATGGATGTCGTCTATGCCCTCAAGAGGCAAGGACGTACCTTGTACGGATTCGGAGGT 200765 Query 16697 TAA 16699 ||| Sbjct 200764 TAA 200762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070970415818