Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq230 96.9 4e-15 >seq230 Length=975444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||||||| |||||||| || |||||||||||| || || || ||||| || | Sbjct 390083 ACATCAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGA 390024 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG 21587 | || || |||||||| ||||||| ||| || | ||| || || | ||||| ||| | Sbjct 390023 AAGTCAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGG 389964 Query 21588 AAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTT 21647 |||||||||| || || || | ||| || || || | || ||| | || | || | | Sbjct 389963 AAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAG---CGT 389907 Query 21648 TATCC-AAT--ATCCATTTTTCTGCCCATTTTGCCTT-TTCT 21685 ||||| || ||||| || |||||||| ||||| |||| Sbjct 389906 TATCCGCATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCT 389865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531870042836240