Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq230 154 2e-32 seq318 149 8e-31 >seq230 Length=975444 Score = 154 bits (170), Expect = 2e-32 Identities = 455/696 (65%), Gaps = 23/696 (3%) Strand=Plus/Minus Query 32953 TTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC----TTGA--GACATAACT 33006 ||| ||||||||||| | ||||| || || ||| || ||| | ||| ||| Sbjct 390432 TTTTTTTAAAAGTCAGCTTCTAAGTTGAATTGGCGATCCTCAGCATTGGCCGTCATGACT 390373 Query 33007 CCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGAT 33066 || |||||||||||||| || ||||| || ||||| || ||||| || || | || Sbjct 390372 CCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAA 390313 Query 33067 ATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCA 33126 || || |||||||| ||||| ||||| ||| || || | || || |||| | ||| Sbjct 390312 ATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATCCGAGCTCA 390253 Query 33127 GAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 33186 || ||||| || ||||| | | || || ||||| || | |||||| || Sbjct 390252 AGAAGCAATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCA 390193 Query 33187 ATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 33246 || ||| | || | || |||| || || || |||||| || || || Sbjct 390192 ATGAGTCGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGC-- 390135 Query 33247 ATAATAGATCT--AACGGTTTCTTCACTCGG-----TGGATGCAATAAATGTTTAAACAT 33299 || ||| | || |||| |||| | | || | || || || |||| Sbjct 390134 --AAACGATTTGCAAAATCCTCTTT--TCGGACAACTTGTTG-ACCAAGTGCTTGTACAT 390080 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| ||||| || || |||| ||| |||||||| || | ||||||| || || Sbjct 390079 CAAGCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGT 390020 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 | ||||||||| | || ||||| || ||||| || |||| || || ||| ||||| Sbjct 390019 CAATCCGGGCATCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAA 389960 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC--- 33476 ||| |||||||| |||| ||| || || | || ||| ||| |||| ||| | || Sbjct 389959 GAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTATCCGC 389900 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 || ||||| || ||||| | ||||||||| | || ||||| ||||| || || Sbjct 389899 ATTGATCCAGTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGC 389840 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || ||||| | || ||| |||||| | || ||||| || | ||||| || Sbjct 389839 GTTGAAGAGGTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAATGAGGAGACTGTA 389780 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33632 |||| |||||||||||| || || | |||||| Sbjct 389779 AGTTTCGCTATGAATGTTTTCCATAGCGACCTGAAA 389744 >seq318 Length=230163 Score = 149 bits (164), Expect = 8e-31 Identities = 295/435 (68%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| || || ||||| || || || ||||| || || || ||| | Sbjct 42764 ATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTGGACTTGCGG 42705 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 || || || ||||| || || || | ||||||||||| |||||||| || || || || Sbjct 42704 TTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGACTCAATGATG 42645 Query 63066 GCTTTCCAGACGACTCGAGCCTTTATTATAGATTT--GTATCTCCTTTCTCTTTCGTATA 63123 || ||| || || ||||||| | | | || | || | | ||| |||||| Sbjct 42644 GCAGCCCAAACCTCTTGAGCCTTGACTT--GCTTGCGGAATTTGCCTTCAGCCTCGTATT 42587 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 ||||||| || || || || ||||| | | ||||||| ||||| |||| | Sbjct 42586 TCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACACTCATGGG 42527 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||| | |||| |||| ||||| || |||||||| || | || ||||||| Sbjct 42526 GACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGTCGGGAATCC 42467 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | || | | || || || | | || |||||||| ||||| || || |||| Sbjct 42466 AGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTTTGCGGAGAT 42407 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 | | ||| | | ||||| | ||||||||||||||||| ||||| | |||| |||| Sbjct 42406 CCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGGCTCCTGGCC 42347 Query 63364 GTTTGTTTCCTCCCT 63378 |||||| ||||||| Sbjct 42346 TTTTGTTGCCTCCCT 42332 Score = 102 bits (112), Expect = 1e-16 Identities = 228/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 |||||| || || ||||| || || || || ||||| || |||| ||| ||| | | Sbjct 41836 TTTAGAAATCAAAGCGCAGCGCTTCAAAGTATCATAAATGTCCTCAATGGAATCCCCACT 41777 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63631 |||| | | ||||| || || || | ||| | | |||| | ||||| || | ||| Sbjct 41776 CATGGTCAAGAGAAAGCAACTGGATAATTGCGGCCTGGGAGTTGCGGCATTGAACATGGT 41717 Query 63632 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT-AGCTGAGT 63690 |||||||||||| || || ||| || || | | || || || ||||| | | | | Sbjct 41716 AGGAGAAGCGTGAGTGAATAGTTTCTCCGACATCATGTTATAAGTTTCAATGATATCA-T 41658 Query 63691 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750 | ||||| |||||| || || ||||| | ||| | ||| ||||| || | ||| | Sbjct 41657 CGATATCTTCGCCATGAATGCCGACGGCGACTCTCATCAGCATATGCTGGGGCCGTTCCA 41598 Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 ||| ||| || || || | ||| || ||||||||||| || ||||| || | Sbjct 41597 CGACTTTGCCGTCGATCTTGAGCAAATAACTCCGCTCCAAAGTTTTGAAGCCAAAGTATT 41538 Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| ||||| || ||||| | ||| | ||||| || Sbjct 41537 GGTAGCTGAAGTCGCGGTCGTAGACAATGGCGGAGTTCAG 41498 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 |||||| | ||||| ||||| | || || ||||| || || | | ||||||||||| Sbjct 44463 CTTGTCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCC 44404 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||| || || |||| ||| ||||| || |||||| | || |||| | || | || Sbjct 44403 CGTCTTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATTGGG 44344 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 || || || || | |||| || || || || ||||| |||||||| | ||| || | Sbjct 44343 GTCGGCGATGTGCACGTTCAATGACTGGCTCTGGTCGATAAAGGCTCCGCGGTCAGCCGA 44284 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 ||| || | || || ||||| || ||||| | ||||| || Sbjct 44283 CATCTTGAGGACGGTTTTTTGGCTGATCTCCCAGACGGTTTTGTA 44239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622911178078160