Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq282 113 4e-20 seq252 102 8e-17 >seq282 Length=398316 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | ||||| || |||| ||| | || | ||| | | Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || || ||||| |||||||| || || ||||| |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAACGTCAGCGACTATA 26946 ||| | | |||| | ||| |||||||||||||||| | | |||| ||||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCA--GACTATA 140371 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||||||||| ||| | ||||| || || | | ||||| ||| Sbjct 140370 ACATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGA 140321 >seq252 Length=615714 Score = 102 bits (112), Expect = 8e-17 Identities = 204/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| || || || | |||||||| ||||| || | | ||| |||||||||| Sbjct 534282 AAACCCACGAAGATATTTGGAATGCGGCTCAAATCCAATTGAAAACTGAAGGTAAAATTC 534341 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 | |||| | | || ||||| |||||||||||||| || |||||||| | || ||| || Sbjct 534342 ATGGATTCATGCGGATGTATTGGGCCAAAAAGATCCTGGAGTGGACCCGAAATCCAGAAG 534401 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGG-TCGCGATCCT 71848 | || | || | | || |||| | || || | ||| | | || || ||| || || Sbjct 534402 AAGCCTTGGAATTTGCTCTTTACTTTAATGACAAGTACTCTTTGGATGGATCG-GACTCT 534460 Query 71849 AACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAA 71908 || |||| ||| |||||||||||| |||| ||| |||| ||| | ||| ||| Sbjct 534461 AATGGTTTTGTTGGTTGCATGTGGTCCATTGTCGGAATTCATGATCAAGGCTGGACTGAA 534520 Query 71909 CGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAAT 71968 || | | || || ||||| | | ||||||| || ||| ||||||| ||| || Sbjct 534521 CGACCTATTTTCGGAAAAATCAGATTTATGAATTACGCGGGATGCAAACGCAAATTCGAT 534580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478634721346720