Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq239 165 2e-35 seq318 134 4e-26 >seq239 Length=840022 Score = 165 bits (182), Expect = 2e-35 Identities = 431/645 (67%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 111277 TATTTGGAGAAACAATGCGTTTTAATCTG--TCAACTCATTTTCCACTTCTC-ACAACAA 111333 ||||||||| |||||| || |||||| | | ||||||| ||| | ||||| | Sbjct 248380 TATTTGGAGCTCAAATGCGGTTCAATCTGCGTGATGGAATTTTCCCCTTATTGACAACCA 248321 Query 111334 AGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAA 111393 | ||| | |||| || |||| ||||||||| | ||||| || || || || | Sbjct 248320 AAAAAACCTTTTGGCGAGGCATTGCAGAAGAACTTTTTTGGTTCATCCGTGGTTCAACCA 248261 Query 111394 ATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACT 111453 ||| |||||| | | | ||| || || |||||||||| ||||||||| | |||| Sbjct 248260 ATGGCAATGAATTGTCTGAAAAGAACGTCCGGATTTGGGATGCCAATGGATCAAGAGACT 248201 Query 111454 TTCTAGATTCAGTTGGTCTTGTCGACAACG--AAGAAGGTGATCTCGGACCAGTTTACGG 111511 |||| || || | ||| | || || ||| |||||| || || |||||||| Sbjct 248200 TTCTGGACA-AGCAAGGATTGACT-CATCGTGAAGTCAATGATCTTGGTCCTGTTTACGG 248143 Query 111512 ATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCACGACTCA-TATGATTCAC 111570 ||| |||||||| || |||||||| || ||| || |||||| | || | || | | Sbjct 248142 ATTCCAATGGCGTCATTTTGGTGCGGAATACCAAGACATGCATG-CTGATTACTCTGGCC 248084 Query 111571 AGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTC 111630 | || ||||| | || | |||||||| ||||||||||||| || | | | Sbjct 248083 AAGGTGTGGATCAGCTCAAGGAGGTCATTGACAAAATTAAGAACAAGCCGGATGACAGGC 248024 Query 111631 GCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTC 111690 | || || ||| |||| |||||||| | || || |||||||| | ||||| |||| Sbjct 248023 GGATCATCATGTGTGCTTGGAACCCGACTGACCTGAGCAAAATGGCTTTGCCACCTTGTC 247964 Query 111691 ATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGA 111749 || | | ||| || ||||| || | | || ||| |||||| |||| || || Sbjct 247963 ATTGTCT-TGCTCAATTTTACGTGGCCAATGGTGAGCTCAGCTGCCAATTGTACCAAAGA 247905 Query 111750 TCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGC 111809 || |||||||| || | ||||| || || || |||||| ||| || || | ||| Sbjct 247904 TCCGCTGATATGGGATTAGGTGTACCTTTCAACATTGCATCTTATGCCCTTTTGACTCAT 247845 Query 111810 TTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCG 111869 | || |||||| | || | | || | || || || |||| |||| ||||| Sbjct 247844 ATGATTGCTCATGTGACCGGTTTGAAGACTGGAGACTTTGTTCATACCCTCGGCGATGCT 247785 Query 111870 CATGTTTACACAAACCACATTGATGCACTTAAAACACAG-TTGAA 111913 ||||| ||| ||||| || || || | || || ||| ||||| Sbjct 247784 CATGTCTACTTGAACCATATCGACGCTTTGAAGACTCAGCTTGAA 247740 >seq318 Length=230163 Score = 134 bits (148), Expect = 4e-26 Identities = 266/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 363868 CATGCCGATATTTTTGAGTTTCTTG-AGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || ||||| || || ||||||| | ||||| |||||| ||||| |||||| | | Sbjct 42382 CACGCGGATATCTTCGA-TTTCTTGGATCTCCGCAAAAACCACGGAAAGGAGGAACAGAG 42440 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 || ||||| || |||| || || ||| || | ||| || ||||| ||||| ||| Sbjct 42441 GGCTCGTGACCTCTTCTTTGGGCTCTGGATTCCCGACTTATTCATGAAACGCGTCAAGGA 42500 Query 363987 AGGTAAGAAT-TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | |||| ||| ||| | || || || || ||||| || | |||| |||| Sbjct 42501 AT-TCGGAATGTGGAGCCTCATGTGTCCCCATGAGTGTCCGGGATTGGCCGACTGCTGGG 42559 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 | || |||| || | ||||| || || || | || || || || ||| ||| Sbjct 42560 GCGAAGACTTTGAGAGATTGTACGAGAAATACGAGGCTGAAGGCAAATTCCGCAAG-CAA 42618 Query 364106 TTCCCG-CACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || | | || || | ||| ||||||||| || |||||||||||||| || || || Sbjct 42619 GTCAAGGCTCAAGAGGTTTGGGCTGCCATCATTGAGTCGCAGATTGAGACTGGTACTCCT 42678 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 |||||| | ||||| || | |||||||||||||||||||||||| | | || || ||| Sbjct 42679 TATATGCTCTACAAGGACGCTTGCAACCGCAAGTCCAACCAGCAGAATTTGGGCACCATT 42738 Query 364225 CAGCAGAGCAACCTATGTACCGAGAT 364250 || ||||| || || ||||| Sbjct 42739 AAGTGCTCAAACCTCTGCACGGAGAT 42764 Score = 84.2 bits (92), Expect = 6e-11 Identities = 225/344 (65%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 364813 ACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTAC 364872 |||||||| |||| || || || || || |||||||| |||| || || || || | Sbjct 44062 ACAAGCAACATTTACTCTCGTCGAGTGCTCTCCGGAGAGTTTCAAGTCGTCAACAACCAT 44121 Query 364873 CTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATC 364932 | | ||| | | || | || || |||| ||| |||||| ||| | | || Sbjct 44122 TTGTTGCGGGACTTGACTGAACTCGACCTCTGGGACGACTCCATGAAAAACAAGTTGATT 44181 Query 364933 GCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTAC 364992 || || || ||||| | || |||| || | || | || | ||| | | ||| Sbjct 44182 GCGGCCAACGGTTCCATTCAAGGCATTGAAGAGATCCCGGCCGAGATCAAGGCCCTCTAC 44241 Query 364993 AAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCT 365052 |||||||| ||||| || | ||| || | | ||| |||| || ||||| || Sbjct 44242 AAAACCGTCTGGGAGATCAGCCAAAAAACCGTCCTCAAGATGTCGGCTGACCGCGGAGCC 44301 Query 365053 TTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTT 365112 |||||| ||||||||||| || ||||| ||| | | || | | |||||||| Sbjct 44302 TTTATCGACCAGAGCCAGTCATTGAACGTGCACATCGCCGACCCCAATTTTGCCAAGCTG 44361 Query 365113 ACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | || ||||| |||||||| ||| || ||| || ||||| || Sbjct 44362 TCCTCTATGCACTTCTACGGCTGGCAAGTCGGCCTCAAGACGGG 44405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303276349417532