Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq282 123 2e-23 seq230 116 3e-21 seq275 100 2e-16 seq243 82.4 7e-11 >seq282 Length=398316 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || |||||||| | || || || ||| | Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || || ||||| |||||||| || || ||||| |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || | |||||| | ||| || ||||||||||||| | | | ||||| | |||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAG--ACTATA 140371 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGAC 24219 |||||||||||||||| || ||||| | || | | |||||||| |||| Sbjct 140370 ACATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGAC 140320 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| || || | || || || | |||||| |||| || |||||| Sbjct 140779 AAAATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGCC 140720 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| || || ||||| || ||||| || || ||| Sbjct 140719 TCCGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGAT 140660 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | |||| | | ||||||||||| ||||||| | | | | |||||||| Sbjct 140659 CAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTAC 140600 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| ||||| || |||||| | ||||| || Sbjct 140599 AACATCCAAAAGGAGTCTACATTGCATTTGGT 140568 >seq230 Length=975444 Score = 116 bits (128), Expect = 3e-21 Identities = 309/467 (66%), Gaps = 25/467 (5%) Strand=Plus/Minus Query 104589 TTTGTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATT 104648 || |||||| || || ||||| |||||||| || || ||||| || |||||||| || | Sbjct 390364 TTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCATCAAGAGAAATGTTCTC 390305 Query 104649 CATAAATTCGAAAGGATT--CAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAAC 104706 ||| || || |||||||| ||| || || | | || | | || ||||| | | | Sbjct 390304 CATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCAT--CCGAGCTCAAGAAGC 390247 Query 104707 AGTCGATCCGCCACAAATTCGATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATT 104766 | ||| || || ||| | | |||||||| ||| | | |||||||||| | | | Sbjct 390246 AATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAGT 390187 Query 104767 GCGACG-GGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACAT 104825 |||| ||||| || | ||| | || || | || || ||||||||||| || || Sbjct 390186 -CGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGAT 390128 Query 104826 GTTCAGCACCTTGCTTTCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAGAG 104885 | || | | | |||| || | |||| ||| | | | | ||||| | Sbjct 390127 TTGCAAAATCCTCTTTTCGGACAACTTG------TTGACCA---AGTGCTTGTACATCAA 390077 Query 104886 GCAGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAA 104945 ||| |||||||| || ||||| ||||| ||||| || || | |||||||||| ||||||| Sbjct 390076 GCATGCAAAGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAA 390017 Query 104946 GCCAGG--TAGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCG 105003 || || | | || | || || | | || | ||||| ||||| || ||| Sbjct 390016 TCCGGGCATCAATCCTCGCTTCTTCAGCC--------AGAAAATGGCGGCAAAGCTTCCG 389965 Query 105004 GAGAAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGC 105050 || || || | |||||||| || || ||||| || | ||| || Sbjct 389964 GAAAAGAAAATTCCTTCGACTGAAGCGAAAGCGACAATTCTTTCTGC 389918 >seq275 Length=453286 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || |||||||| ||||||||||| | || ||| |||| || ||| | Sbjct 384752 AATGCAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGAGGTTGAGCCTTC 384693 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || |||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 384692 TGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 384633 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||| | | ||||||||| | || |||| | | | | || || || || Sbjct 384632 GCAACGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCTCTCTGACTACAA 384573 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || |||||||| |||| || || || |||||||| ||||| Sbjct 384572 TATCCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGGGGAGG 384525 >seq243 Length=773012 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || || || | |||||| |||| || ||| | | Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| ||||| || || || || || ||||| || || Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| || ||| || |||||||| |||| | | | | || || || ||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAAC 552162 Query 24171 ATTCAAAAAG 24180 |||||||||| Sbjct 552163 ATTCAAAAAG 552172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429911760477030