Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq282 134 1e-26 seq243 116 3e-21 seq275 100 3e-16 seq285 87.8 2e-12 >seq282 Length=398316 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || ||||||||||| ||||||||||||||| Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || |||||||| || |||| ||||| ||||| || || || Sbjct 140610 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 140669 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||||| | || | || |||| || ||| | Sbjct 140670 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACC 140729 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || ||||| ||||| || || || || ||||| Sbjct 140730 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 >seq243 Length=773012 Score = 116 bits (128), Expect = 3e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 |||||||||||||| || |||| ||||| ||||| || || || || ||| | || Sbjct 552170 TTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAATC 552111 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 || | |||||||| ||||| ||||| || || || ||| || ||||| | || Sbjct 552110 AACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCG 552051 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | |||||||| | ||| | |||| ||||| ||| ||||| || | |||||| |||||| Sbjct 552050 ATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGAAA 551991 Query 131227 ATCTGCATG 131235 ||||||||| Sbjct 551990 ATCTGCATG 551982 >seq275 Length=453286 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | ||| | || || || || | ||| || ||||| || || ||||| || Sbjct 384524 GCCTCCCCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGA 384583 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| | |||||||| || |||| ||||| |||||||| || || Sbjct 384584 GAGGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGG 384643 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | || | ||||| | | ||| | Sbjct 384644 AATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAAC 384703 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || |||| |||||||||||| |||||||| Sbjct 384704 CTCGAGGGTGATGGTCTTTCCAGTTAAAGTTTTTACGAAGATCTGCAT 384751 >seq285 Length=381527 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 |||||||| || |||| ||||| ||||| || ||||| ||||| || ||||| ||| Sbjct 34464 TGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATC 34405 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 || ||||| | || | || || | || ||| | |||| ||| | |||||| || Sbjct 34404 TTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATGGTTTTGCCC 34345 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| |||||||||||||| Sbjct 34344 GTGAGGGTTTTGACGAAAATCTGCAT 34319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471985505859840