Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq282 118 9e-22 seq311 93.3 4e-14 seq275 82.4 7e-11 >seq282 Length=398316 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || || | || || | || ||||| | || Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| |||||||| || ||||| || || ||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||||||||| |||||| | ||||||| ||||| || || || || Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||||||| || || ||| | || || | | ||||| ||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGA 140321 >seq311 Length=259814 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| || || || || || | || ||||||||||| ||||| || Sbjct 106226 GACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGCAAGCAATTGGAG 106167 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||| | ||| |||||||| || || |||||||| ||||||| || ||| Sbjct 106166 GATGGCCGCACTCTCTCCGACTACAATATCCAGAAGGAATCCACTTTACATTTGGTTCTA 106107 Query 25212 AGGCTAAGAGGAGG 25225 | | ||||||| Sbjct 106106 CGTTTGCGAGGAGG 106093 >seq275 Length=453286 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| | ||||| | || || ||| |||| Sbjct 384523 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCC 384464 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| ||||| || || ||||| || || || Sbjct 384463 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 384404 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || ||||| ||||| || |||| || ||| | || ||||| Sbjct 384403 CAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAAC 384344 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || || || || || || || || ||| Sbjct 384343 ATCCAGAAGGAGTCTACTCTTCACTTGGTG 384314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433303569238190