Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq230 178 1e-39 seq264 111 2e-19 seq257 111 2e-19 seq720 100 3e-16 seq255 100 3e-16 >seq230 Length=975444 Score = 178 bits (196), Expect = 1e-39 Identities = 318/459 (69%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 |||| ||||| ||| | | |||||||||| |||||| || | |||||| || | || Sbjct 390246 AATCGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCCATTCATGCCAATGAGT 390187 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATT 93040 || ||||| || || |||| ||| || | || || | |||||||| | |||| Sbjct 390186 CGACAAGGTAAGGCTTCAGTCAGGAACTCAATTTCAATATCCACGGCTTCGCAAACGATT 390127 Query 93041 TCTATTACTCTACTATTTGGTGG--TTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 | | | || || || || || ||| || | | |||||||| ||||| |||| Sbjct 390126 TGCAAAATCCT-CTTTTCGGACAACTTGTTG-ACCAAGTGCTTGTACATCAAGCATGCAA 390069 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 |||| ||||| ||||||||||||| || ||||| || |||||||| || || || || | Sbjct 390068 AGTCCGTATGCAAACCTTCGTCTCTGGAGATCAATTCGTTGCTGAAAGTCAATCCGGGCA 390009 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || |||||| ||||| ||||| || || | ||||| || || ||||| || || |||| Sbjct 390008 TCAATCCTCGCTTCTTCAGCCAGAAAATGGCGGCAAAGCTTCCGGAAAAGAAAATTCCTT 389949 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC--TGATCCA 93276 | || | || || || ||||| | ||| ||| | ||| || | || ||||||| Sbjct 389948 CGACTGAAGCGAAAGCGACAATTCTTTCTGCATAGGAAGCGTTAT--CCGCATTGATCCA 389891 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || || ||||| | ||| || |||| || ||| | |||||| || ||||| || || Sbjct 389890 GTTCAACGCCCATTTGGCCTTCTTCTGAACGGCAGGCACTGTTTCAATTGCGTTGAAGAG 389831 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 || | || || | | |||| ||||| ||||| || Sbjct 389830 GTTGTGGCGTTCCGCGGGATCTTTGATGTAGGTATCAAT 389792 >seq264 Length=516394 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 |||||||||||||||| ||||||||||| |||||||||| |||| | || ||| | || Sbjct 450556 AGTCAGGTTGGCCGAGCGGTCTAAGGCGTCAGATTTAAGCTCTGATACTCAATCGAGTGC 450615 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 450616 GTGGGTTCGAACCCCACACCTGACAAAT 450643 >seq257 Length=560073 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||| || | | || Sbjct 282426 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTACTCGTATGAGTGC 282485 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 282486 GTGGGTTCGAACCCCACACCTGACAAAT 282513 >seq720 Length=17315 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||| |||||||||| |||||||||||||||||||||| |||||| | | | | || Sbjct 16175 AGTCAAGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTACACGAAAGTGTGC 16116 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||| ||||||| Sbjct 16115 GTGGGTTCGAACCCCACACTTGACAAA 16089 >seq255 Length=569652 Score = 100 bits (110), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 |||||||||||||||| ||||||||||| |||||||||| |||| | || | | || Sbjct 314403 AGTCAGGTTGGCCGAGCGGTCTAAGGCGTCAGATTTAAGCTCTGATACTCGTATGAGTGC 314462 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 314463 GTGGGTTCGAACCCCACACCTGACAAA 314489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556828599524240