Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq282 95.1 1e-14 >seq282 Length=398316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || |||| ||||| || |||||| |||| |||| || | Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || || |||||||| || |||| |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || |||||| | |||||| || || | || ||||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATAAATAAA 111424 || ||||||||||| || || ||| | || | ||| || | ||||| || |||||||| Sbjct 140368 ATTCAAAAAGAATCAACTCTTCATCTTGTACTTCGTTTGAGAGGTGGACACTAAATAAA 140310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423016149269200