Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq275 145 6e-30 seq311 136 3e-27 seq282 122 7e-23 seq285 100 2e-16 seq243 95.1 1e-14 seq230 95.1 1e-14 >seq275 Length=453286 Score = 145 bits (160), Expect = 6e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 22206 TACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGA 22265 ||||||| | ||||| || || || ||||||||||| || || || |||| || || Sbjct 384764 TACATTTCAGACAATGCAGATCTTCGTAAAAACTTTAACTGGAAAGACCATCACCCTCGA 384705 Query 22266 AGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 || || | | |||||| | || || |||| || || |||||||||||||| || Sbjct 384704 GGTTGAGCCTTCTGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCAT 384645 Query 22326 TCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGT 22385 ||| || || || |||||| | || ||||| ||||| || || |||||| ||||||| | Sbjct 384644 TCCCCCAGACCAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCCT 384585 Query 22386 CTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || ||||| || || || ||||| ||| | || || || ||| ||||| | ||||| Sbjct 384584 CTCTGACTACAATATCCAGAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGGGGAGG 384525 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||||| || ||||| ||| |||| ||||| || || | || Sbjct 384523 ATGCAAATCTTCGTTAAGACTTTGACTGGTAAGACGATCACCCTTGAGGTTGAGCCGTCC 384464 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || |||||||||||||| ||||| || ||||| Sbjct 384463 GATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 384404 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||| || || |||||| || || |||| || |||||| Sbjct 384403 CAACGTTTGATCTTCGCTGGCAAGCAATTGGAGGATGGGCGTACTCTCTCAGACTACAAC 384344 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | || || || ||||| Sbjct 384343 ATCCAGAAGGAGTCTACTCTTCACTTGGTGTTGCG 384309 >seq311 Length=259814 Score = 136 bits (150), Expect = 3e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||||||||| |||||||| || ||||| Sbjct 106259 GATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 106200 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| || || |||||| |||||| ||||||| ||||| Sbjct 106199 CAACGTTTGATCTTTGCCGGCAAGCAATTGGAGGATGGCCGCACTCTCTCCGACTACAAT 106140 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| ||||||| ||| | || ||||| |||||| Sbjct 106139 ATCCAGAAGGAATCCACTTTACATTTGGTTCTACGTTTGCGAGGAGGT 106092 >seq282 Length=398316 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| ||||| || ||| | ||||| || || | || || || || || | Sbjct 140780 AAAAATGCAAATCTTTGTCAAGACTCTCACCGGCAAGACCATTACCCTCGAGGTTGAGGC 140721 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||| ||| | || | |||| ||||| |||||||||||||| ||||| || || Sbjct 140720 CTCCGACACCATCGAAAACGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCAGA 140661 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| |||||| | || ||||| ||||| || | || ||| || ||| | |||||| Sbjct 140660 TCAGCAACGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGAGCGATTA 140601 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| || || || | ||||| ||| | || | || || ||| Sbjct 140600 CAACATCCAAAAGGAGTCTACATTGCATTTGGTTCTCCGTCTCCGTGGTGGT 140549 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || ||| | || | || |||||| || || Sbjct 140548 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACGATTACCTTGGAGGTGGAAGCCTCC 140489 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || |||||||| ||||| ||||| || |||||| Sbjct 140488 GACACAATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCTCCAGATCAA 140429 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| | || ||| |||||| | || || || ||| Sbjct 140428 CAACGTTTGATTTTTGCCGGAAAACAACTCGAAGATGGCCGCACATTGTCAGACTATAAC 140369 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 140368 ATTCAAAAAGAATCAAC 140352 >seq285 Length=381527 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 |||| |||| || || ||||| ||||| || ||||| | || || ||||| |||| Sbjct 34301 TTTTTTACAGGAGTCAAAATGCAGATTTTCGTCAAAACCCTCACGGGCAAAACCATCACC 34360 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 || || ||||| || | || ||| | || || |||| || || |||||||||||| Sbjct 34361 CTCGAGGTGGAGCCCTCTGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAG 34420 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 || ||||| || ||||| |||||| | || ||||| ||||| || || || || Sbjct 34421 GGAATTCCTCCAGATCAGCAACGTTTGATCTTTGCTGGCAAGCAATTGGAAGA 34473 >seq243 Length=773012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || ||||| || | || || || || || | || Sbjct 551983 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAGACCATTACCCTCGAGGTAGAGCCTTCC 552042 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || || || || |||||||| ||||| || || || Sbjct 552043 GATACTATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCAG 552102 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| ||||| | |||||| |||||| | || |||||| Sbjct 552103 CAAAGGTTGATTTTCGCCGGAAAACAACTCGAGGATGGCCGCACTTTGAGTGACTACAAC 552162 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 552163 ATTCAAAAAG 552172 >seq230 Length=975444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 117067 TCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTA 117126 |||||||||| |||||||| ||||||||||| || || ||||| ||||| || | Sbjct 389931 TCGCTTTCGCTTCAGTCGAAGGAATTTTCTTTTCCGGAAGCTTTGCCGCCATTTTCTGGC 389990 Query 117127 TCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACG 117186 | |||| ||| | ||||| || | || || ||||||||||| || || | |||| Sbjct 389991 TGAAGAAGCGAGGATTGATGCCCGGATTGACTTTCAGCAACGAATTGATCTCCAGAGACG 390050 Query 117187 AAGGTTTACACACCGATTTTGCGTGCATGTACTACAA 117223 ||||||| || || || ||||| ||| || ||||| Sbjct 390051 AAGGTTTGCATACGGACTTTGCATGCTTGATGTACAA 390087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419704335997690