Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq335 95.1 2e-14 seq242 93.3 9e-14 seq636 91.5 3e-13 seq266 91.5 3e-13 seq272 89.7 1e-12 seq695 84.2 4e-11 seq228 84.2 4e-11 >seq335 Length=186942 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 136099 AGAAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 136158 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 136159 CGAGCCCCACGTTGGGC 136175 >seq242 Length=777683 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 258994 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 259053 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 259054 GCCCCACGTTGGGC 259067 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 285156 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 285097 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 285096 GAGCCCCACGTTGGGC 285081 >seq636 Length=62163 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 37791 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 37732 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 37731 CCCCACGTTGGGC 37719 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| | ||||||||||||||| Sbjct 62141 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATATCAGGGTCGTGGGTTCGAG 62082 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 62081 CCCCACGTTGGGC 62069 >seq266 Length=499465 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 209242 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 209183 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 209182 CCCCACGTTGGGC 209170 >seq272 Length=471569 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| | ||||||||||| |||||||||||||| Sbjct 16073 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGACACTCTTAATCTCAGGGTCGTGGGTTCGA 16132 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 16133 GCCCCACGTTGGGC 16146 >seq695 Length=23004 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||| Sbjct 10431 GTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCCCGGGTTCGAAT 10490 Query 142113 CCCGCCAGAGACGC 142126 |||| ||| || || Sbjct 10491 CCCGGCAGGGATGC 10504 >seq228 Length=1206555 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||| Sbjct 537112 GTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCCCGGGTTCGAAT 537053 Query 142113 CCCGCCAGAGACGC 142126 |||| ||| || || Sbjct 537052 CCCGGCAGGGATGC 537039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027775879470466