Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq275 152 9e-32 seq282 141 2e-28 seq285 125 1e-23 seq247 116 7e-21 seq311 113 8e-20 seq244 86.0 1e-11 seq230 86.0 1e-11 seq279 84.2 4e-11 >seq275 Length=453286 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| |||||||| || || ||||| || |||||||| || || ||| Sbjct 384297 CCACCACGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 384356 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || || ||||| || ||||| || | | ||| || || || ||| Sbjct 384357 AGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAGATCAAACGTTGCTGATCTGGGGGA 384416 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| |||||||| || ||||| || | | || || Sbjct 384417 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCGGACGGCTCAACC 384476 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || | ||||| ||||| || ||||| Sbjct 384477 TCAAGGGTGATCGTCTTACCAGTCAAAGTCTTAACGAAGATTTGCAT 384523 Score = 143 bits (158), Expect = 5e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| || || || || || ||||| || || || ||||| || | ||||| Sbjct 384539 CAAGACCAAGTGAAGGGTAGATTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATC 384598 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 || || ||||| || || || || | | ||| ||||| || |||||||| |||||||| Sbjct 384599 CTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 384658 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| |||||||| |||||||| || | | || || || | ||||||||| Sbjct 384659 TTGGATCTTAGCCTTGACATTTTCGATGGTATCAGAAGGCTCAACCTCGAGGGTGATGGT 384718 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || | || || ||||| ||||||||| Sbjct 384719 CTTTCCAGTTAAAGTTTTTACGAAGATCTGCATT 384752 >seq282 Length=398316 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || | || ||||| ||||||||||| |||||| Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || || || || | | ||| || || || ||| Sbjct 140610 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 140669 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || ||||||||| ||||||||||| | | || || Sbjct 140670 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACC 140729 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| ||||| || || ||||| |||||||| || || |||||| Sbjct 140730 TCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATT 140777 Score = 138 bits (152), Expect = 2e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || |||||||| |||||||| || || | ||| | |||||||| | Sbjct 140341 CAAGATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCGA 140400 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 || || ||||| || || | | |||||| || || ||||| || || |||||||| | Sbjct 140401 GTTGTTTTCCGGCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGGA 140460 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||| ||| ||| || ||||| | | ||| || |||||||| || || || | Sbjct 140461 TCTTGGCCTTCACGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTGC 140520 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||||||||| || || ||||| Sbjct 140521 CAGTCAGGGTCTTGACAAAGATTTGCAT 140548 >seq285 Length=381527 Score = 125 bits (138), Expect = 1e-23 Identities = 128/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 ||||| ||||| || ||||| || || || || | | ||| || || || ||||| || Sbjct 34478 CCTCC--TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCC 34421 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 ||||||||||| ||||| |||||||| || |||||||| | | || || || | Sbjct 34420 CTCCTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAG 34361 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||||||||| ||||||||||| |||||||| ||||||||| || Sbjct 34360 GGTGATGGTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCATTTTG 34315 >seq247 Length=664417 Score = 116 bits (128), Expect = 7e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 ||||| ||||||| |||||| || || || ||||| | || || || ||||||||||| Sbjct 132318 CGAGTAATTTTTCTGGTCACAAATGTTTCACCACGACGTGGACTTTCATGGTTGAAGAGA 132377 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 || || ||||| || ||||| |||| || || | | | || ||||| ||||||| ||| Sbjct 132378 ATACCATTGCAGGCAAACATCTCATACGCTTCTCTGAAATTGACGACACTCCAGTAGGCA 132437 Query 268484 AACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGG 268543 || | ||| || ||| | || || || | ||| | |||| ||| | |||||||| Sbjct 132438 AATAACTTGGCCACTCCATAGGGTGATCTTGGGTAAAAGGCTGTCTTTTCGTTTTGAGGA 132497 Query 268544 ATTTCTCGGACTTTGCC 268560 | |||| | |||||||| Sbjct 132498 ACTTCTTGAACTTTGCC 132514 >seq311 Length=259814 Score = 113 bits (124), Expect = 8e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || | || | ||||| |||| ||||| || || ||||| || || |||||| Sbjct 106093 CCTCCTCGCAAACGTAGAACCAAATGTAAAGTGGATTCCTTCTGGATATTGTAGTCGGAG 106152 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || || ||||| ||||| || || | | ||| || || || ||| Sbjct 106153 AGAGTGCGGCCATCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 106212 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || |||||||||||||| ||||| |||||||| |||||||| || Sbjct 106213 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATC 106259 >seq244 Length=710267 Score = 86.0 bits (94), Expect = 1e-11 Identities = 200/302 (66%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 176229 GGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGG 176288 || |||| || ||||| || || | | ||| || |||||||| ||| | |||| Sbjct 439993 GGCGACATCTGGGTGAAAATGTAACGGGGAGAGGCGTGATCCTTGCCACCGGCCAAGCGG 439934 Query 176289 GAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGG 176348 | || || ||||| || | | ||||||||||||||| || || || ||||||| Sbjct 439933 GTGCCAAACTGTCCAATGGGTTGCAACAAATTGATGTTATTGGACCCAACAAAGTCTTGA 439874 Query 176349 GCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCA 176408 |||| || | |||| ||| || || || || |||||||||||| | |||| Sbjct 439873 GCCAAACCAATGATGGTTCCCATCAGTGATGCTTCTCCGTGGTGATAGGCACTCATCTCG 439814 Query 176409 CTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCC 176468 | | ||||||| || || || ||||||| ||| || | || ||||| | Sbjct 439813 CCCACGGATCCGGCCAATTGGGCAACTTTGACTTCACGTTTGTCATTTCGCTTAAGACAA 439754 Query 176469 GAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGC 176528 | ||||| | || || || ||||| | ||||||||||| | || |||||||| Sbjct 439753 GTGAACATGACTTTACGTTGGCCAGGCTTGAACCCATCGACGACACAGGGTATGGAACGT 439694 Query 176529 TC 176530 || Sbjct 439693 TC 439692 >seq230 Length=975444 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 ||||||| || ||||| ||||| || || || ||| || ||||||| ||||| | Sbjct 390380 TCATGACTCCTGCCTTTTGGTATTCACCAACGCGTTTCTCAAAAAAGTTGGTTTTGCCAT 390321 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 | || |||||| ||||||||||||||| || || || || || |||| | | | Sbjct 390320 CAAGAGAAATGTTCTCCATGAAGTCAAAAGGATTTTCAACGTTGTACACCTTGTTGCATC 390261 Query 10054 CGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 |||| | ||| ||| |||||||| || ||| ||||||||| ||||| ||| Sbjct 390260 CGAGCTC-AAGAAGCAAT-CGGTCAGCGACATACTTGATGTACTGAGCCATCAAGTCGCC 390203 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTC 10144 ||||||||||| | || || || | ||| || Sbjct 390202 ATTCATGCCAATGAGTCGACAAGGTAAGGCTTC 390170 >seq279 Length=426766 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 84447 GACGAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTG 84506 ||| ||||||||||| |||||||||||| |||||| ||||| ||||||| |||| | Sbjct 146686 GACAAGAGCGCCCGGGTAGCTCAGTCGGTAGAGCGTTAGGCTTTTAACCTAACGGTCCAG 146745 Query 84507 GGTTCGAGCCCCACATCGGGC 84527 |||||||||||| |||||| Sbjct 146746 GGTTCGAGCCCCTGCTCGGGC 146766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921569107184720