Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq282 131 1e-25 seq243 89.7 4e-13 seq285 82.4 6e-11 >seq282 Length=398316 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | ||||| || ||||| |||||||||||| Sbjct 140547 ATACCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCG 140606 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||||| |||||| ||||| || ||||| |||| | ||| || || || || Sbjct 140607 CTCAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGG 140666 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| || || || | | ||| | |||||||| || || Sbjct 140667 GGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCA 140726 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || ||||| || ||||| Sbjct 140727 ACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCAT 140776 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||||||||| || || || || || |||||| |||||||| || Sbjct 140352 GTTGATTCTTTTTGAATGTTATAGTCTGACAATGTGCGGCCATCTTCGAGTTGTTTTCCG 140411 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | ||| ||||| || |||||||| || |||||||| ||||| || Sbjct 140412 GCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTC 140471 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| || ||| || |||| ||| | ||| ||||| ||||| || Sbjct 140472 ACGTTCTCAATTGTGTCGGAGGCTTCCACCTCCAAGGTAATCGTCTTGCCAGTCAGGGTC 140531 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 140532 TTGACAAAGATTTGCAT 140548 >seq243 Length=773012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||||||||| || |||| ||| || ||| || |||||||| || ||| | | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | | || ||||| |||||||| || || || || ||||| || | | || Sbjct 552112 TCAACCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTT 552053 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | || |||| | || || || | ||| | || || || |||| |||||| || | Sbjct 552052 CGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGACGA 551993 Query 114373 AAATCTGCATGG 114384 |||||||||||| Sbjct 551992 AAATCTGCATGG 551981 >seq285 Length=381527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| | ||| || ||||| |||| | ||| || || || |||||||| || || ||| Sbjct 34473 TCTTCCAATTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTG 34414 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | ||||| |||||| | || || || || | ||| | Sbjct 34413 TCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCAGAGGGCTCCACCTCGAGGGTGATG 34354 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || || ||||| || ||||||||||| Sbjct 34353 GTTTTGCCCGTGAGGGTTTTGACGAAAATCTGCAT 34319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420110713085112