Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq318 176 9e-39 seq230 113 9e-20 >seq318 Length=230163 Score = 176 bits (194), Expect = 9e-39 Identities = 304/442 (69%), Gaps = 0/442 (0%) Strand=Plus/Minus Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || ||||| ||||||||||| |||||| |||||||||| | ||| || ||| Sbjct 42773 TACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGTGCCCAAATTCTGCTGGTTG 42714 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 |||||| |||||| ||||||||||||||||| | || || ||||| | ||| | Sbjct 42713 GACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCAATCTGCGAC 42654 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 | | || | ||| | || ||||||||| | |||| ||||| || ||| Sbjct 42653 TCAATGATGGCAGCCCAAACCTCTTGAGCCTTGACTTGCTTGCGGAATTTGCCTTCAGCC 42594 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 ||||| ||||| ||| || || ||||||| ||| | | || || ||| Sbjct 42593 TCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGCAGTCGGCCAATCCCGGACAC 42534 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || |||||||| |||||| ||| |||||||| | | |||||| | |||| Sbjct 42533 TCATGGGGACACATGAGGCTCCACATTCCGAATTCCTTGACGCGTTTCATGAATAAGTCG 42474 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 || |||||||| | ||||||||| | | |||||| || ||| || ||| || Sbjct 42473 GGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCTGTTCCTCCTTTCCGTGGTTTTTG 42414 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | || ||||| || || |||| || ||||||| || |||| ||||| |||| ||| Sbjct 42413 CGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACGGTTCCAAGTAGATGGCGAAGGCT 42354 Query 245144 CCGGGCCGCTTGTTGCCTCCCT 245165 || |||| ||||||||||||| Sbjct 42353 CCTGGCCTTTTGTTGCCTCCCT 42332 Score = 114 bits (126), Expect = 2e-20 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 ||||||||| |||| | || || || ||| |||| |||||| || ||| | || || Sbjct 43765 CCACATGTCGTACTGGAAGAGTCCTTTAGAGACCGGGCAGCCCTCATAAGTCTGATATGG 43706 Query 244360 ACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 || | || | || |||||| | || | || | ||||| ||||||||||| Sbjct 43705 TCCCAACTTTTCCGCTATCTCACAGCTGGCCTCCAAAGCTCCATAGTAAATGGTCTCGAA 43646 Query 244420 GATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAA 244479 |||| |||||| | | |||||| || || ||| || ||||| ||||| Sbjct 43645 GATCTGCTTGTTAAGGAGCTGGGCCTCTGGGCTTTCAAATGGGTAGCGCATCAAGATGAA 43586 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 | ||||||| | |||||||| || ||||| || || | ||| ||| | |||||| Sbjct 43585 GGCGTCGGCTAAGCCCTGCACTCCAATGCCAATTGGGCGGTGACGCATATTGGAGTTACG 43526 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 ||| ||||| |||||||| | ||| | ||||| | |||||| ||||| || |||| Sbjct 43525 GGCCTCGGGGACGGGGTAGTAATTGACATCGATGATCTTGTTAAGGTTCCGAGTGA 43470 >seq230 Length=975444 Score = 113 bits (124), Expect = 9e-20 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 42297 GACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGAC 42356 || |||||| ||||||||||| || | | | |||||| |||||||| |||||| Sbjct 389412 GATATCTGGAAAATGTACAAGAAAGCCATGGCCAGCTTCTGGACTGCCGAGGAAATTGAC 389471 Query 42357 CTGGCCAAGGACACGGCCGGCTGGG---AGTCACTGTCTGAGAACGAAAAGTTTTTCCTC 42413 || ||| |||| ||| | |||| ||| || || |||||||| ||| || Sbjct 389472 TTGTCCATGGACTTGGCAGATTGGGCCAAGT---TGAAGGACGACGAAAAGCACTTCATC 389528 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 || || | | |||||||| |||||||| |||||||| |||||||||||||| | Sbjct 389529 AAGCACGTCTTAGCCTTCTTTGCCGCCTCCGACGGCATTGTCAATGAGAACCTTGTTGAA 389588 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTT--TGAGGCGCGCTGCTTCTACGGCTTCCA 42526 ||||||||| |||| || || | || |||||| | ||||| || |||||||| Sbjct 389589 AGGTTCATGCAAGAAGTTCA--AATTCCTGAGGCCAGATGCTTTTATGGCTTCCA 389641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944284593585760