Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq239 147 2e-30 >seq239 Length=840022 Score = 147 bits (162), Expect = 2e-30 Identities = 267/388 (69%), Gaps = 2/388 (1%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||||| || ||||| || | || |||| ||| || || | | | ||| || ||||| Sbjct 247776 GTAGACATGAGCATCGCCGAGGGTATGAACAAAGTCTCCAGTCTTCAAACCGGTCACATG 247835 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 ||||| ||||| ||| || |||| ||| |||||||| ||||| || || || ||||| Sbjct 247836 AGCAATCATATGAGTCAAAAGGGCATAAGATGCAATGTTGAAAGGTACACCTAATCCCAT 247895 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA-C 20369 || | || || || |||| || ||| |||||||| | || || ||||||||| | Sbjct 247896 ATCAGCGGATCTTTGGTACAATTGGCAGCTGAGCTCACCATTGGCCACGTAAAATTGAGC 247955 Query 20370 ATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACA 20429 | |||| ||||| || || | ||||| || ||| | ||||||||| ||||||| Sbjct 247956 AAGACAA-TGACAAGGTGGCAAAGCCATTTTGCTCAGGTCAGTCGGGTTCCAAGCACACA 248014 Query 20430 TAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGT 20489 | ||||| | || || | ||| || || || ||| || | | | | | || | Sbjct 248015 TGATGATCCGCCTGTCATCCGGCTTGTTCTTAATTTTGTCAATGACCTCCTTGAGCTGAT 248074 Query 20490 CAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCC 20549 | | || ||||| | || ||||||| | ||| ||| |||| ||||| || | || Sbjct 248075 CCACACCTTGGCCAGAGTAATCAGCATGCATGTCTTGGTATTCCGCACCAAAATGACGCC 248134 Query 20550 ACTGGAAACCGTAAACAGGTCCCAAATC 20577 | ||||| ||||||||||| || | ||| Sbjct 248135 ATTGGAATCCGTAAACAGGACCAAGATC 248162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441347277617840