Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq282 116 9e-21 seq275 116 9e-21 seq243 111 4e-19 >seq282 Length=398316 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || || |||||||| || || ||| Sbjct 140550 CCACCACGGAGACGGAGAACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTC 140609 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| || || || ||||||| ||| || ||| |||||| Sbjct 140610 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGTTGCTGA---TCTGGG 140666 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| || || |||||||| || | ||| | || Sbjct 140667 GGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCA 140726 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || || ||||| ||||| ||||||||||| || || |||||| Sbjct 140727 ACCTCGAGGGTAATGGTCTTGCCGGTGAGAGTCTTGACAAAGATTTGCATT 140777 >seq275 Length=453286 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || || || || ||||| || || |||||| Sbjct 384333 TCCTTCTGGATGTTGTAGTCTGAGAGAGTACGCCCATCCTCCAATTGCTTGCCAGCGAAG 384392 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| || ||| |||||| || || || || || ||||| || || || || Sbjct 384393 ATCAAACGTTGCTGA---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACA 384449 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | |||| || || || || || ||||||||||| || |||| |||||| Sbjct 384450 TTTTCAATGGTATCGGACGGCTCAACCTCAAGGGTGATCGTCTTACCAGTCAAAGTCTTA 384509 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 384510 ACGAAGATTTGCAT 384523 >seq243 Length=773012 Score = 111 bits (122), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| || || ||||| | ||||| || || || | ||||||||| ||||| | Sbjct 552172 CTTTTTGAATGTTGTAGTCACTCAAAGTGCGGCCATCCTCGAGTTGTTTTCCGGCGAAAA 552113 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||| | || || ||||| ||||| || ||||||||||| || || || || | Sbjct 552112 TCAACCTTTGCTGG---TCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 552056 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| |||| |||| | ||||| ||||| || || ||||| || |||| ||| |||| Sbjct 552055 TTTCGATAGTATCGGAAGGCTCTACCTCGAGGGTAATGGTCTTACCCGTCAAAGTTTTGA 551996 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 551995 CGAAAATCTGCAT 551983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179584481146428