Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq244 87.8 4e-12 >seq244 Length=710267 Score = 87.8 bits (96), Expect = 4e-12 Identities = 198/294 (67%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 |||||||| || || | | ||||||||||| ||||| ||| | | || ||||| Sbjct 439981 GTGAAAATGTAACGGGGAGAGGCGTGATCCTTGCCACCGGCCAAGCGGGTGCCAAACTGT 439922 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || || |||| | |||||||||||| || ||| | || || || | | | Sbjct 439921 CCAATGGGTTGCAACAAATTGATGTTATTGGACCCAACAAAGTCTTGAGCCAAACCAATG 439862 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| || ||| |||||||| || ||||||||||| || ||| | ||| | ||| Sbjct 439861 ATGGTTCCCATCAGTGATGCTTCTCCGTGGTGATAGGCACTCATCTCGCCCACGGATCCG 439802 Query 297617 CTGAACTGTGCAACCTTCACGT--CGGTCGTCAAATTGCGCTT--GAAAGCTGAATATAT 297672 || || ||||| || || | || | ||| ||| ||||| || | ||| | || Sbjct 439801 GCCAATTGGGCAACTTTGACTTCACGTTTGTC--ATTTCGCTTAAGACAAGTGA--ACAT 439746 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTC 297726 ||||| ||||| ||| ||||| ||||| ||||| | || ||| ||||| Sbjct 439745 GACTTTACGTTGGCCAGGCTTGAACCCATCGACGACACAGGGTATGGAACGTTC 439692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102814631613100