Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq282 113 5e-20 seq291 95.1 1e-14 seq319 93.3 5e-14 seq267 93.3 5e-14 seq306 91.5 2e-13 seq296 89.7 6e-13 seq361 87.8 2e-12 seq246 87.8 2e-12 seq278 86.0 7e-12 seq225 84.2 2e-11 >seq282 Length=398316 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||||||| ||||||||| || |||||||| ||| || || | || || Sbjct 140568 ACCAAATGCAATGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTACGTCCATCTTCC 140627 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| ||||| || || | || ||||| || | || | || ||||||||| | Sbjct 140628 AGTTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 140687 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| |||| | | | |||||| | || || |||| || ||||| ||| Sbjct 140688 ATTTTGGCCTTGACGTTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATGGTCTTG 140747 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || ||||| ||||||||||||||||| Sbjct 140748 CCGGTGAGAGTCTTGACAAAGATTTGCATTTT 140779 >seq291 Length=339505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 139121 AAAAAAATCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 139180 Query 57058 TCACCACTATACTACCGAGGATTGAATATA 57087 | |||||||||||| ||||||||| ||||| Sbjct 139181 TTACCACTATACTAACGAGGATTGCATATA 139210 >seq319 Length=230131 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||| |||||| || | | ||| |||||| ||||||||||||||||||||| || Sbjct 4610 TGAAAAAAATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 4551 Query 57056 ACTCACCACTATACTACCGAGGAT 57079 ||| |||||||||||| ||||||| Sbjct 4550 ACTTACCACTATACTAACGAGGAT 4527 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3558 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 3617 Query 57066 ATACTACCGAGGATTGAATATATAA 57090 |||||| ||||||| ||||||| Sbjct 3618 ATACTAACGAGGATGACTTATATAA 3642 >seq267 Length=497725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/107 (80%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 113620 AAAAAAATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 113679 Query 57058 TCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTGCAA 57104 | |||||||||||| |||||||| || || |||||||||| || Sbjct 113680 TTACCACTATACTAACGAGGATTTCTTA-CTA--TTGAATATTGAAA 113723 >seq306 Length=281891 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 53113 AAAAAAATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 53172 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 | |||||||||||| |||||||||| Sbjct 53173 TTACCACTATACTATCGAGGATTGA 53197 >seq296 Length=321611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 126474 AAAAAAATTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 126415 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||| ||||||| Sbjct 126414 TTACCACTATACTATCGAGGAT 126393 >seq361 Length=128253 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 113035 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 113094 Query 57066 ATACTACCGAGGATTG 57081 |||||| ||||||||| Sbjct 113095 ATACTAACGAGGATTG 113110 >seq246 Length=701585 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||| Sbjct 674322 GAAAAAAAATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 674263 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 674262 CTTACCACTATACTAACGAGGAT 674240 >seq278 Length=442669 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 429929 AAAAAAATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 429988 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||| ||||||| Sbjct 429989 TTACCACTATACTATCGAGGAT 430010 >seq225 Length=1235138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1016248 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1016307 Query 57067 TACTACCGAGGATTGAATATA 57087 ||||| ||||||| ||||| Sbjct 1016308 TACTAACGAGGATGCTATATA 1016328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543181388719840